| RaGOO: fast and accurate reference-guided scaffolding of draft genomes M Alonge, S Soyk, S Ramakrishnan, X Wang, S Goodwin, FJ Sedlazeck, ... Genome biology 20, 1-17, 2019 | 550 | 2019 |
| Major impacts of widespread structural variation on gene expression and crop improvement in tomato M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ... Cell 182 (1), 145-161. e23, 2020 | 537 | 2020 |
| Rapid improvement of domestication traits in an orphan crop by genome editing ZH Lemmon, NT Reem, J Dalrymple, S Soyk, KE Swartwood, ... Nature plants 4 (10), 766-770, 2018 | 454 | 2018 |
| Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato S Soyk, NA Müller, SJ Park, I Schmalenbach, K Jiang, R Hayama, ... Nature Genetics 49 (1), 162-168, 2017 | 448 | 2017 |
| Bypassing negative epistasis on yield in tomato imposed by a domestication gene S Soyk, ZH Lemmon, M Oved, J Fisher, KL Liberatore, SJ Park, A Goren, ... Cell 169 (6), 1142-1155. e12, 2017 | 308 | 2017 |
| Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, K Jenike, S Ou, S Aganezov, X Wang, ... Genome biology 23 (1), 258, 2022 | 190 | 2022 |
| PROTEIN TARGETING TO STARCH is required for localising GRANULE-BOUND STARCH SYNTHASE to starch granules and for normal amylose synthesis in Arabidopsis D Seung, S Soyk, M Coiro, BA Maier, S Eicke, SC Zeeman PLoS biology 13 (2), e1002080, 2015 | 178 | 2015 |
| β-Amylase–Like Proteins Function as Transcription Factors in Arabidopsis, Controlling Shoot Growth and Development H Reinhold, S Soyk, K Šimková, C Hostettler, J Marafino, S Mainiero, ... The Plant Cell 23 (4), 1391-1403, 2011 | 117 | 2011 |
| Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang, ZB Lippman, ... BioRxiv, 2021.11. 18.469135, 2021 | 89 | 2021 |
| The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves D Feike, D Seung, A Graf, S Bischof, T Ellick, M Coiro, S Soyk, S Eicke, ... The Plant Cell 28 (6), 1472-1489, 2016 | 75 | 2016 |
| Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato S Soyk, ZH Lemmon, FJ Sedlazeck, JM Jiménez-Gómez, M Alonge, ... Nature plants 5 (5), 471-479, 2019 | 74 | 2019 |
| Non‐invasive topology analysis of membrane proteins in the secretory pathway T Brach, S Soyk, C Müller, G Hinz, R Hell, F Brandizzi, AJ Meyer The Plant Journal 57 (3), 534-541, 2009 | 70 | 2009 |
| The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation S Soyk, K Šimková, E Zürcher, L Luginbühl, LH Brand, CK Vaughan, ... The Plant Cell 26 (4), 1746-1763, 2014 | 49 | 2014 |
| New horizons for dissecting epistasis in crop quantitative trait variation S Soyk, M Benoit, ZB Lippman Annual review of genetics 54, 287-307, 2020 | 25 | 2020 |
| Meristem transitions and plant architecture—learning from domestication for crop breeding N Gaarslev, G Swinnen, S Soyk Plant Physiology 187 (3), 1045-1056, 2021 | 19 | 2021 |
| Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome J He, M Alonge, S Ramakrishnan, M Benoit, S Soyk, NT Reem, ... The Plant Cell 35 (1), 351-368, 2023 | 10 | 2023 |
| SVCollector: optimized sample selection for validating and long-read resequencing of structural variants FJ Sedlazeck, Z Lemmon, S Soyk, WJ Salerno, Z Lippman, MC Schatz BioRxiv, 342386, 2018 | 8 | 2018 |
| Optimized sample selection for cost-efficient long-read population sequencing TR Ranallo-Benavidez, Z Lemmon, S Soyk, S Aganezov, WJ Salerno, ... Genome research 31 (5), 910-918, 2021 | 7 | 2021 |
| Author correction: duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato S Soyk, ZH Lemmon, FJ Sedlazeck, JM Jiménez-Gómez, M Alonge, ... Nature Plants 5 (8), 903-903, 2019 | 3 | 2019 |
| Florigen pathway toolkit Z Lippman, S Soyk, SJ Park US Patent App. 16/092,862, 2020 | 1 | 2020 |
