Cas9 gRNA engineering for genome editing, activation and repression S Kiani, A Chavez, M Tuttle, RN Hall, R Chari, D Ter-Ovanesyan, J Qian, ... Nature methods 12 (11), 1051-1054, 2015 | 352 | 2015 |
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ... Nature biotechnology 32 (6), 545-550, 2014 | 320 | 2014 |
Infrastructure for engineered emergence on sensor/actuator networks J Beal, J Bachrach IEEE Intelligent Systems 21 (2), 10-19, 2006 | 248 | 2006 |
CRISPR transcriptional repression devices and layered circuits in mammalian cells S Kiani, J Beal, MR Ebrahimkhani, J Huh, RN Hall, Z Xie, Y Li, R Weiss Nature methods 11 (7), 723-726, 2014 | 237 | 2014 |
Aggregate programming for the internet of things J Beal, D Pianini, M Viroli Computer 48 (9), 22-30, 2015 | 211 | 2015 |
CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology SV Iverson, TL Haddock, J Beal, DM Densmore ACS synthetic biology 5 (1), 99-103, 2016 | 188 | 2016 |
Organizing the aggregate: Languages for spatial computing J Beal, S Dulman, K Usbeck, M Viroli, N Correll Formal and Practical Aspects of Domain-Specific Languages: Recent …, 2013 | 164 | 2013 |
Robust estimation of bacterial cell count from optical density J Beal, NG Farny, T Haddock-Angelli, V Selvarajah, GS Baldwin, ... Communications biology 3 (1), 512, 2020 | 156 | 2020 |
Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks J Beal, T Lu, R Weiss PloS one 6 (8), e22490, 2011 | 133 | 2011 |
Protelis: practical aggregate programming D Pianini, M Viroli, J Beal Proceedings of the 30th Annual ACM Symposium on Applied Computing, 1846-1853, 2015 | 128 | 2015 |
Robotic fabricator AM Mozeika, A Adler, F Yaman-Sirin, J Beal US Patent App. 13/530,664, 2013 | 123 | 2013 |
An end-to-end workflow for engineering of biological networks from high-level specifications J Beal, R Weiss, D Densmore, A Adler, E Appleton, J Babb, S Bhatia, ... ACS synthetic biology 1 (8), 317-331, 2012 | 112 | 2012 |
Composable continuous-space programs for robotic swarms J Bachrach, J Beal, J McLurkin Neural Computing and Applications 19, 825-847, 2010 | 107 | 2010 |
Engineering resilient collective adaptive systems by self-stabilisation M Viroli, G Audrito, J Beal, F Damiani, D Pianini ACM Transactions on Modeling and Computer Simulation (TOMACS) 28 (2), 1-28, 2018 | 99 | 2018 |
Sharing structure and function in biological design with SBOL 2.0 N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ... ACS synthetic biology 5 (6), 498-506, 2016 | 96 | 2016 |
SBOL visual: a graphical language for genetic designs JY Quinn, RS Cox III, A Adler, J Beal, S Bhatia, Y Cai, J Chen, K Clancy, ... PLoS biology 13 (12), e1002310, 2015 | 91 | 2015 |
Methods and apparatus for energy demand management JS Beal, JR Bachrach US Patent 8,271,147, 2012 | 88 | 2012 |
A higher-order calculus of computational fields G Audrito, M Viroli, F Damiani, D Pianini, J Beal ACM Transactions on Computational Logic (TOCL) 20 (1), 1-55, 2019 | 85 | 2019 |
Fast self-healing gradients J Beal, J Bachrach, D Vickery, M Tobenkin Proceedings of the 2008 ACM symposium on Applied computing, 1969-1975, 2008 | 81 | 2008 |
From distributed coordination to field calculus and aggregate computing M Viroli, J Beal, F Damiani, G Audrito, R Casadei, D Pianini Journal of Logical and Algebraic Methods in Programming 109, 100486, 2019 | 76 | 2019 |