QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010 | 31310 | 2010 |
UCHIME improves sensitivity and speed of chimera detection RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight Bioinformatics 27 (16), 2194-2200, 2011 | 12697 | 2011 |
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 9281 | 2019 |
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 8917 | 2012 |
A core gut microbiome in obese and lean twins PJ Turnbaugh, M Hamady, T Yatsunenko, BL Cantarel, A Duncan, RE Ley, ... nature 457 (7228), 480-484, 2009 | 8377 | 2009 |
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013 | 7398 | 2013 |
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, J Huntley, N Fierer, ... The ISME journal 6 (8), 1621-1624, 2012 | 7368 | 2012 |
UniFrac: a new phylogenetic method for comparing microbial communities C Lozupone, R Knight Applied and environmental microbiology 71 (12), 8228-8235, 2005 | 7366 | 2005 |
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, CA Lozupone, ... Proceedings of the national academy of sciences 108 (supplement_1), 4516-4522, 2011 | 7261 | 2011 |
Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... nature 486 (7402), 222-227, 2012 | 7140 | 2012 |
Obesity alters gut microbial ecology RE Ley, F Bäckhed, P Turnbaugh, CA Lozupone, RD Knight, JI Gordon Proceedings of the national academy of sciences 102 (31), 11070-11075, 2005 | 6620 | 2005 |
Linking long-term dietary patterns with gut microbial enterotypes GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ... Science 334 (6052), 105-108, 2011 | 6221 | 2011 |
The human microbiome project PJ Turnbaugh, RE Ley, M Hamady, CM Fraser-Liggett, R Knight, ... Nature 449 (7164), 804-810, 2007 | 6136 | 2007 |
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns MG Dominguez-Bello, EK Costello, M Contreras, M Magris, G Hidalgo, ... Proceedings of the National Academy of Sciences 107 (26), 11971-11975, 2010 | 4921 | 2010 |
Diversity, stability and resilience of the human gut microbiota CA Lozupone, JI Stombaugh, JI Gordon, JK Jansson, R Knight Nature 489 (7415), 220-230, 2012 | 4716 | 2012 |
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME journal 6 (3), 610-618, 2012 | 4712 | 2012 |
Gut microbiota from twins discordant for obesity modulate metabolism in mice VK Ridaura, JJ Faith, FE Rey, J Cheng, AE Duncan, AL Kau, NW Griffin, ... Science 341 (6150), 1241214, 2013 | 3669 | 2013 |
PyNAST: a flexible tool for aligning sequences to a template alignment JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ... Bioinformatics 26 (2), 266-267, 2010 | 3611 | 2010 |
Evolution of mammals and their gut microbes RE Ley, M Hamady, C Lozupone, PJ Turnbaugh, RR Ramey, JS Bircher, ... science 320 (5883), 1647-1651, 2008 | 3592 | 2008 |
The impact of the gut microbiota on human health: an integrative view JC Clemente, LK Ursell, LW Parfrey, R Knight Cell 148 (6), 1258-1270, 2012 | 3558 | 2012 |