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Alex S. Felmeister
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The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
4412020
Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia
C Chen, W Yu, F Alikarami, Q Qiu, C Chen, J Flournoy, P Gao, Y Uzun, ...
Blood, The Journal of the American Society of Hematology 139 (14), 2198-2211, 2022
632022
Pediatric high-grade glioma resources from the Children’s Brain Tumor Tissue Consortium
H Ijaz, M Koptyra, KS Gaonkar, JL Rokita, VP Baubet, L Tauhid, Y Zhu, ...
Neuro-oncology 22 (1), 163-165, 2020
352020
A longitudinal footprint of genetic epilepsies using automated electronic medical record interpretation
S Ganesan, PD Galer, KL Helbig, SE McKeown, M O’Brien, AK Gonzalez, ...
Genetics in Medicine 22 (12), 2060-2070, 2020
322020
The biorepository portal toolkit: an honest brokered, modular service oriented software tool set for biospecimen-driven translational research
AS Felmeister, AJ Masino, TJ Rivera, AC Resnick, JW Pennington
BMC genomics 17, 419-432, 2016
212016
Phenotypic homogeneity in childhood epilepsies evolves in gene-specific patterns across 3251 patient-years of clinical data
D Lewis-Smith, S Ganesan, PD Galer, KL Helbig, SE McKeown, ...
European Journal of Human Genetics 29 (11), 1690-1700, 2021
132021
Preliminary exploratory data analysis of simulated national clinical data research network for future use in annotation of a rare tumor biobanking initiative
AS Felmeister, AJ Waanders, SES Leary, J Stevens, JL Mason, ...
2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017
82017
Pediatric high grade glioma resources from the children’s brain tumor tissue consortium (CBTTC) and pediatric brain tumor atlas (PBTA)
H Ijaz, M Koptyra, KS Gaonkar, JL Rokita, VP Baubet, L Tauhid, Y Zhu, ...
bioRxiv, 656587, 2019
62019
Scalable biobanking: A modular electronic Honest Broker and Biorepository for integrated clinical, specimen and genomic research
AS Felmeister, TJ Rivera, AJ Masino, AC Resnick, JW Pennington
Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on …, 2015
52015
Gene-12. The Children’s Brain Tumor Tissue Consortium (CBTTC) infrastructure facilitates collaborative research in pediatric central nervous system tumors
A Felmeister, R Lulla, A Waanders, P Raman, M Santi, J Lilly, J Mason, ...
Neuro-Oncology 19 (Suppl 4), iv20, 2017
42017
gene-15. Cavatica-a pediatric genomic cloud empowering data discovery through the pediatric brain tumor atlas
P Raman, AJ Waanders, PB Storm, JV Lilly, J Mason, AP Heath, ...
Neuro-Oncology 19 (suppl_4), iv21-iv21, 2017
42017
A Framework for Analysis, Ontological Evaluation, and Visualization in Preparation to Predictive Analytics in Pediatric Brain Tumor Research
AS Felmeister, AJ Waanders, JL Mason, J Stevens, LC Bailey, S Ganesan, ...
2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020
32020
Single-cell multi-omics reveals elevated plasticity and stem-cell-like blasts relevant to the poor prognosis of KMT2A-rearranged leukemia
C Chen, W Yu, F Alikarami, Q Qiu, C Chen, J Flournoy, P Gao, Y Uzun, ...
bioRxiv, 2020.12. 06.413930, 2020
22020
Abstract LB-008: The Pediatric Brain Tumor Atlas: building an integrated, multi-platform data-rich ecosystem for collaborative discovery in the cloud
AC Resnick, PB Storm, AJ Waanders, JV Lilly, RR Lulla, S Mueller, ...
Cancer Research 77 (13_Supplement), LB-008-LB-008, 2017
22017
DIPG-51. BLACKFYNN: a secure, cloud-based platform for sharing and analyzing research ready data for pediatric CNS cancers
C Johnson, A Christini, A Felmeister, C Baglieri, M Kambhampati, ...
Neuro-Oncology 20 (suppl_2), i59-i59, 2018
12018
Accelerating pediatric brain tumor research through team science solutions
A Christini, AJ Waanders, JB Wagenaar, AS Felmeister, M Santi, ...
Cancer Research 77 (13 Supplement), 2593-2593, 2017
12017
Analysis of electronic medical records reveals the clinical phenotypic evolution of genetic epilepsies through time
D Lewis-Smith, S Ganesan, P Galer, K Helbig, S McKeown, M O'Brien, ...
EPILEPSIA 62, 214-215, 2021
2021
Correction: A longitudinal footprint of genetic epilepsies using automated electronic medical record interpretation
S Ganesan, PD Galer, KL Helbig, SE McKeown, M O’Brien, AK Gonzalez, ...
Genetics in Medicine 22 (11), 1921-1922, 2020
2020
PDTM-16. PEDIATRIC HIGH GRADE GLIOMA RESOURCES FROM THE CHILDREN’S BRAIN TUMOR TISSUE CONSORTIUM (CBTTC) AND PEDIATRIC BRAIN TUMOR ATLAS (PBTA)
H Ijaz, M Koptyra, K Gaonkar, JL Rokita, V Baubet, L Tauhid, Y Zhu, ...
Neuro-Oncology 21 (Suppl 6), vi190, 2019
2019
The Pediatric Brain Tumor Atlas-Transforming the landscape of research
Y Zhu, Y Guo, AP Heath, P Raman, E Appert, J Mason, B Zhang, ...
Cancer Research 79 (13_Supplement), 3667-3667, 2019
2019
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