The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 441 | 2020 |
Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia C Chen, W Yu, F Alikarami, Q Qiu, C Chen, J Flournoy, P Gao, Y Uzun, ... Blood, The Journal of the American Society of Hematology 139 (14), 2198-2211, 2022 | 63 | 2022 |
Pediatric high-grade glioma resources from the Children’s Brain Tumor Tissue Consortium H Ijaz, M Koptyra, KS Gaonkar, JL Rokita, VP Baubet, L Tauhid, Y Zhu, ... Neuro-oncology 22 (1), 163-165, 2020 | 35 | 2020 |
A longitudinal footprint of genetic epilepsies using automated electronic medical record interpretation S Ganesan, PD Galer, KL Helbig, SE McKeown, M O’Brien, AK Gonzalez, ... Genetics in Medicine 22 (12), 2060-2070, 2020 | 32 | 2020 |
The biorepository portal toolkit: an honest brokered, modular service oriented software tool set for biospecimen-driven translational research AS Felmeister, AJ Masino, TJ Rivera, AC Resnick, JW Pennington BMC genomics 17, 419-432, 2016 | 21 | 2016 |
Phenotypic homogeneity in childhood epilepsies evolves in gene-specific patterns across 3251 patient-years of clinical data D Lewis-Smith, S Ganesan, PD Galer, KL Helbig, SE McKeown, ... European Journal of Human Genetics 29 (11), 1690-1700, 2021 | 13 | 2021 |
Preliminary exploratory data analysis of simulated national clinical data research network for future use in annotation of a rare tumor biobanking initiative AS Felmeister, AJ Waanders, SES Leary, J Stevens, JL Mason, ... 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017 | 8 | 2017 |
Pediatric high grade glioma resources from the children’s brain tumor tissue consortium (CBTTC) and pediatric brain tumor atlas (PBTA) H Ijaz, M Koptyra, KS Gaonkar, JL Rokita, VP Baubet, L Tauhid, Y Zhu, ... bioRxiv, 656587, 2019 | 6 | 2019 |
Scalable biobanking: A modular electronic Honest Broker and Biorepository for integrated clinical, specimen and genomic research AS Felmeister, TJ Rivera, AJ Masino, AC Resnick, JW Pennington Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on …, 2015 | 5 | 2015 |
Gene-12. The Children’s Brain Tumor Tissue Consortium (CBTTC) infrastructure facilitates collaborative research in pediatric central nervous system tumors A Felmeister, R Lulla, A Waanders, P Raman, M Santi, J Lilly, J Mason, ... Neuro-Oncology 19 (Suppl 4), iv20, 2017 | 4 | 2017 |
gene-15. Cavatica-a pediatric genomic cloud empowering data discovery through the pediatric brain tumor atlas P Raman, AJ Waanders, PB Storm, JV Lilly, J Mason, AP Heath, ... Neuro-Oncology 19 (suppl_4), iv21-iv21, 2017 | 4 | 2017 |
A Framework for Analysis, Ontological Evaluation, and Visualization in Preparation to Predictive Analytics in Pediatric Brain Tumor Research AS Felmeister, AJ Waanders, JL Mason, J Stevens, LC Bailey, S Ganesan, ... 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020 | 3 | 2020 |
Single-cell multi-omics reveals elevated plasticity and stem-cell-like blasts relevant to the poor prognosis of KMT2A-rearranged leukemia C Chen, W Yu, F Alikarami, Q Qiu, C Chen, J Flournoy, P Gao, Y Uzun, ... bioRxiv, 2020.12. 06.413930, 2020 | 2 | 2020 |
Abstract LB-008: The Pediatric Brain Tumor Atlas: building an integrated, multi-platform data-rich ecosystem for collaborative discovery in the cloud AC Resnick, PB Storm, AJ Waanders, JV Lilly, RR Lulla, S Mueller, ... Cancer Research 77 (13_Supplement), LB-008-LB-008, 2017 | 2 | 2017 |
DIPG-51. BLACKFYNN: a secure, cloud-based platform for sharing and analyzing research ready data for pediatric CNS cancers C Johnson, A Christini, A Felmeister, C Baglieri, M Kambhampati, ... Neuro-Oncology 20 (suppl_2), i59-i59, 2018 | 1 | 2018 |
Accelerating pediatric brain tumor research through team science solutions A Christini, AJ Waanders, JB Wagenaar, AS Felmeister, M Santi, ... Cancer Research 77 (13 Supplement), 2593-2593, 2017 | 1 | 2017 |
Analysis of electronic medical records reveals the clinical phenotypic evolution of genetic epilepsies through time D Lewis-Smith, S Ganesan, P Galer, K Helbig, S McKeown, M O'Brien, ... EPILEPSIA 62, 214-215, 2021 | | 2021 |
Correction: A longitudinal footprint of genetic epilepsies using automated electronic medical record interpretation S Ganesan, PD Galer, KL Helbig, SE McKeown, M O’Brien, AK Gonzalez, ... Genetics in Medicine 22 (11), 1921-1922, 2020 | | 2020 |
PDTM-16. PEDIATRIC HIGH GRADE GLIOMA RESOURCES FROM THE CHILDREN’S BRAIN TUMOR TISSUE CONSORTIUM (CBTTC) AND PEDIATRIC BRAIN TUMOR ATLAS (PBTA) H Ijaz, M Koptyra, K Gaonkar, JL Rokita, V Baubet, L Tauhid, Y Zhu, ... Neuro-Oncology 21 (Suppl 6), vi190, 2019 | | 2019 |
The Pediatric Brain Tumor Atlas-Transforming the landscape of research Y Zhu, Y Guo, AP Heath, P Raman, E Appert, J Mason, B Zhang, ... Cancer Research 79 (13_Supplement), 3667-3667, 2019 | | 2019 |