Predicting essential genes based on network and sequence analysis YC Hwang, CC Lin, JY Chang, H Mori, HF Juan, HC Huang Molecular BioSystems 5 (12), 1672-1678, 2009 | 133 | 2009 |
Curated variation benchmarks for challenging medically relevant autosomal genes J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ... Nature biotechnology 40 (5), 672-680, 2022 | 132 | 2022 |
HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements YC Hwang, CF Lin, O Valladares, J Malamon, PP Kuksa, Q Zheng, ... Bioinformatics 31 (8), 1290-1292, 2015 | 65 | 2015 |
A functional genomics screen for microRNA regulators of NF-kappaB signaling AO Olarerin-George, L Anton, YC Hwang, MA Elovitz, JB Hogenesch BMC biology 11, 1-16, 2013 | 64 | 2013 |
Essential Core of Protein−Protein Interaction Network in Escherichia coli CC Lin, HF Juan, JT Hsiang, YC Hwang, H Mori, HC Huang Journal of proteome research 8 (4), 1925-1931, 2009 | 46 | 2009 |
High-throughput identification of long-range regulatory elements and their target promoters in the human genome YC Hwang, Q Zheng, BD Gregory, LS Wang Nucleic acids research 41 (9), 4835-4846, 2013 | 37 | 2013 |
McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes D Hafez, A Karabacak, S Krueger, YC Hwang, LS Wang, RP Zinzen, ... Genome biology 18, 1-21, 2017 | 30 | 2017 |
Open-source mapping and variant calling for large-scale NGS data from original base-quality scores O Krasheninina, YC Hwang, X Bai, A Zalcman, E Maxwell, JG Reid, ... bioRxiv, 2020.12. 15.356360, 2020 | 10 | 2020 |
HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions PP Kuksa, A Amlie-Wolf, YC Hwang, O Valladares, BD Gregory, LS Wang NAR Genomics and Bioinformatics 2 (2), lqaa022, 2020 | 4 | 2020 |
Analysis of nonlinear gene expression progression reveals extensive pathway and age-specific transitions in aging human brains K Cao, P Ryvkin, YC Hwang, FB Johnson, LS Wang Plos one 8 (10), e74578, 2013 | 4 | 2013 |
DRAW+ SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments CF Lin, O Valladares, DM Childress, E Klevak, ET Geller, YC Hwang, ... Bioinformatics 29 (19), 2498-2500, 2013 | 4 | 2013 |
Towards a comprehensive variation benchmark for challenging medically-relevant autosomal genes J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ... Biorxiv, 2021 | | 2021 |
HiPPIE2: Identifying the Transcription Factors Mediating Enhancer-Target Gene Regulation in the Human Genome YC Hwang, PP Kuksa, A Amlie-Wolf, BD Gregory, LS Wang HUMAN HEREDITY 83 (1), 45-46, 2017 | | 2017 |
P1‐001: Prediction of late‐onset Alzheimer's disease‐associated enhancer elements M Tang, C Kramer, G Xu, M Hawk, YC Hwang, CF Lin, P Kuksa, W Wang, ... Alzheimer's & Dementia 11 (7S_Part_7), P336-P336, 2015 | | 2015 |
Identification of Long-Range Regulatory Elements in the Human Genome YC Hwang University of Pennsylvania, 2015 | | 2015 |
Topological characteristics of essential genes in the protein interaction network of essentiala coli bioinformatics CC Lin, YC Hwang, HF Juan, H Mori, HC Huang | | 2006 |