On the biophysics and kinetics of toehold-mediated DNA strand displacement N Srinivas, TE Ouldridge, P Šulc, JM Schaeffer, B Yurke, AA Louis, ... Nucleic acids research 41 (22), 10641-10658, 2013 | 528 | 2013 |
Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model TE Ouldridge, AA Louis, JPK Doye The Journal of chemical physics 134 (8), 2011 | 502 | 2011 |
Hydrodynamic interactions and Brownian forces in colloidal suspensions: Coarse-graining over time and length scales JT Padding, AA Louis Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 74 (3 …, 2006 | 497 | 2006 |
Can polymer coils be modeled as “soft colloids”? AA Louis, PG Bolhuis, JP Hansen, EJ Meijer Physical review letters 85 (12), 2522, 2000 | 476 | 2000 |
Beware of density dependent pair potentials AA Louis Journal of Physics: Condensed Matter 14 (40), 9187, 2002 | 401 | 2002 |
Accurate effective pair potentials for polymer solutions PG Bolhuis, AA Louis, JP Hansen, EJ Meijer The Journal of Chemical Physics 114 (9), 4296-4311, 2001 | 393 | 2001 |
Sequence-dependent thermodynamics of a coarse-grained DNA model P Šulc, F Romano, TE Ouldridge, L Rovigatti, JPK Doye, AA Louis The Journal of chemical physics 137 (13), 2012 | 344 | 2012 |
Introducing improved structural properties and salt dependence into a coarse-grained model of DNA BEK Snodin, F Randisi, M Mosayebi, P Šulc, JS Schreck, F Romano, ... The Journal of chemical physics 142 (23), 2015 | 329 | 2015 |
Mean-field fluid behavior of the Gaussian core model AA Louis, PG Bolhuis, JP Hansen Physical Review E 62 (6), 7961, 2000 | 299 | 2000 |
Representability problems for coarse-grained water potentials ME Johnson, T Head-Gordon, AA Louis The Journal of chemical physics 126 (14), 2007 | 276 | 2007 |
DNA hybridization kinetics: zippering, internal displacement and sequence dependence TE Ouldridge, P Šulc, F Romano, JPK Doye, AA Louis Nucleic acids research 41 (19), 8886-8895, 2013 | 259 | 2013 |
Deep learning generalizes because the parameter-function map is biased towards simple functions G Valle-Perez, CQ Camargo, AA Louis arXiv preprint arXiv:1805.08522, 2018 | 235* | 2018 |
Reversible self-assembly of patchy particles into monodisperse icosahedral clusters AW Wilber, JPK Doye, AA Louis, EG Noya, MA Miller, P Wong The Journal of chemical physics 127 (8), 2007 | 232 | 2007 |
Coarse-graining DNA for simulations of DNA nanotechnology JPK Doye, TE Ouldridge, AA Louis, F Romano, P Šulc, C Matek, ... Physical Chemistry Chemical Physics 15 (47), 20395-20414, 2013 | 225 | 2013 |
Controlling crystallization and its absence: proteins, colloids and patchy models JPK Doye, AA Louis, IC Lin, LR Allen, EG Noya, AW Wilber, HC Kok, ... Physical Chemistry Chemical Physics 9 (18), 2197-2205, 2007 | 225 | 2007 |
DNA nanotweezers studied with a coarse-grained model of DNA TE Ouldridge, AA Louis, JPK Doye Physical Review Letters 104 (17), 178101, 2010 | 221 | 2010 |
Influence of polymer-excluded volume on the phase-behavior of colloid-polymer mixtures PG Bolhuis, AA Louis, JP Hansen Physical review letters 89 (12), 128302, 2002 | 217 | 2002 |
Hydrodynamic and Brownian fluctuations in sedimenting suspensions JT Padding, AA Louis Physical review letters 93 (22), 220601, 2004 | 200 | 2004 |
Effective forces in colloidal mixtures: From depletion attraction to accumulation repulsion AA Louis, E Allahyarov, H Löwen, R Roth Physical Review E 65 (6), 061407, 2002 | 173 | 2002 |
Polymer induced depletion potentials in polymer-colloid mixtures AA Louis, PG Bolhuis, EJ Meijer, JP Hansen The Journal of chemical physics 117 (4), 1893-1907, 2002 | 159 | 2002 |