Functional sites induce long-range evolutionary constraints in enzymes BR Jack, AG Meyer, J Echave, CO Wilke PLoS biology 14 (5), e1002452, 2016 | 97 | 2016 |
Predicting the genetic stability of engineered DNA sequences with the EFM calculator BR Jack, SP Leonard, DM Mishler, BA Renda, D Leon, GA Suárez, ... ACS synthetic biology 4 (8), 939-943, 2015 | 71 | 2015 |
Phage-bacterial dynamics with spatial structure: self organization around phage sinks can promote increased cell densities JJ Bull, KA Christensen, C Scott, BR Jack, CJ Crandall, SM Krone Antibiotics 7 (1), 8, 2018 | 45 | 2018 |
Measuring evolutionary rates of proteins in a structural context DK Sydykova, BR Jack, SJ Spielman, CO Wilke F1000Research 6, 2017 | 22 | 2017 |
Reduced protein expression in a virus attenuated by codon deoptimization BR Jack, DR Boutz, ML Paff, BL Smith, JJ Bull, CO Wilke G3: Genes, Genomes, Genetics 7 (9), 2957-2968, 2017 | 21 | 2017 |
Transcript degradation and codon usage regulate gene expression in a lytic phage BR Jack, DR Boutz, ML Paff, BL Smith, CO Wilke Virus Evolution 5 (2), vez055, 2019 | 15 | 2019 |
Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins EL Jackson, A Shahmoradi, SJ Spielman, BR Jack, CO Wilke Protein Science 25 (7), 1341-1353, 2016 | 9 | 2016 |
Pinetree: a step-wise gene expression simulator with codon-specific translation rates BR Jack, CO Wilke Bioinformatics 35 (20), 4176-4178, 2019 | 6 | 2019 |
Combinatorial approaches to viral attenuation ML Paff, BR Jack, BL Smith, JJ Bull, CO Wilke Msystems 3 (4), 10.1128/msystems. 00046-18, 2018 | 4 | 2018 |
Computational modeling of gene expression dynamics in bacteriophage T7 BR Jack The University of Texas at Austin, 2018 | | 2018 |
Investigating viral attenuation by promoter knockout: a systems approach ML Paff, BR Jack, DR Boutz, BL Smith, CO Wilke, JJ Bull PeerJ PrePrints, 2017 | | 2017 |
context [version 2; peer review: 4 approved] DK Sydykova, BR Jack, SJ Spielman, CO Wilke context [version 2; peer review: 4 approved] 1000, 2018, 1845 | | 1845 |
SMBE 2017 ML Paff, BR Jack, DR Boutz, BL Smith, CO Wilke, JJ Bull | | |
Disrupted proteome in a virus attenuated by codon deoptimization BR Jack, DR Boutz, ML Paff, BL Smith, JJ Bull, CO Wilke | | |