From system modeling to system analysis: The impact of resolution level and resolution distribution in the computer-aided investigation of biomolecules M Giulini, M Rigoli, G Mattiotti, R Menichetti, T Tarenzi, R Fiorentini, ... Frontiers in Molecular Biosciences 8, 676976, 2021 | 36 | 2021 |
Just a flexible linker? The structural and dynamic properties of CBP-ID4 revealed by NMR spectroscopy A Piai, EO Calçada, T Tarenzi, A del Grande, M Varadi, P Tompa, IC Felli, ... Biophysical journal 110 (2), 372-381, 2016 | 35 | 2016 |
Open boundary simulations of proteins and their hydration shells by Hamiltonian adaptive resolution scheme T Tarenzi, V Calandrini, R Potestio, A Giorgetti, P Carloni Journal of chemical theory and computation 13 (11), 5647-5657, 2017 | 24 | 2017 |
Open-Boundary Molecular Mechanics/Coarse-Grained Framework for Simulations of Low-Resolution G-Protein-Coupled Receptor–Ligand Complexes T Tarenzi, V Calandrini, R Potestio, P Carloni Journal of chemical theory and computation 15 (3), 2101-2109, 2019 | 18 | 2019 |
Topology in soft and biological matter L Tubiana, GP Alexander, A Barbensi, D Buck, JHE Cartwright, ... Physics Reports 1075, 1-137, 2024 | 7 | 2024 |
Membrane binding of pore-forming γ-hemolysin components studied at different lipid compositions T Tarenzi, G Lattanzi, R Potestio Biochimica et Biophysica Acta (BBA)-Biomembranes 1864 (9), 183970, 2022 | 7 | 2022 |
Fast, Accurate, and System-Specific Variable-Resolution Modeling of Proteins R Fiorentini, T Tarenzi, R Potestio Journal of Chemical Information and Modeling 63 (4), 1260-1275, 2023 | 5 | 2023 |
Communication pathways bridge local and global conformations in an IgG4 antibody T Tarenzi, M Rigoli, R Potestio Scientific Reports 11 (1), 23197, 2021 | 4 | 2021 |
Comparative Molecular Dynamics Investigation of the Electromotile Hearing Protein Prestin G Abrusci, T Tarenzi, M Sturlese, G Giachin, R Battistutta, G Lattanzi International Journal of Molecular Sciences 22 (15), 8318, 2021 | 3 | 2021 |
In search of a dynamical vocabulary: a pipeline to construct a basis of shared traits in large-scale motions of proteins T Tarenzi, G Mattiotti, M Rigoli, R Potestio Applied Sciences 12 (14), 7157, 2022 | 2 | 2022 |
Chromatin condensates tune nuclear mechano-sensing in Kabuki Syndrome by constraining cGAS activation S D'Annunzio, L Santomaso, D Michelatti, C Bernardis, G Vitali, S Lago, ... bioRxiv, 2024.05. 06.592652, 2024 | | 2024 |
The optimal resolution level of a protein is an emergent property of its structure and dynamics R Fiorentini, T Tarenzi, G Mattiotti, R Potestio arXiv preprint arXiv:2311.08076, 2023 | | 2023 |
Gamma-Hemolysin Components: Computational Strategies for LukF-Hlg2 Dimer Reconstruction on a Model Membrane C Paternoster, T Tarenzi, R Potestio, G Lattanzi International Journal of Molecular Sciences 24 (8), 7113, 2023 | | 2023 |
Hybrid multiscale simulation scheme to accurately predict binding poses and potency in low-resolution membrane receptors of pharmaceutical relevance T Tarenzi Dissertation, RWTH Aachen University, 2019, 2019 | | 2019 |