| Computational analysis of auxin responsive elements in the Arabidopsis thalianaL. genome VV Mironova, NA Omelyanchuk, DS Wiebe, VG Levitsky BMC genomics 15 (Suppl 12), S4, 2014 | 80 | 2014 |
| Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots NA Omelyanchuk, DS Wiebe, DD Novikova, VG Levitsky, N Klimova, ... Scientific reports 7 (1), 2489, 2017 | 39 | 2017 |
| Meta-analysis of transcriptome data identified TGTCNN motif variants associated with the response to plant hormone auxin in Arabidopsis thaliana L. EV Zemlyanskaya, DS Wiebe, NA Omelyanchuk, VG Levitsky, ... Journal of bioinformatics and computational biology 14 (02), 1641009, 2016 | 32 | 2016 |
| Meta-analysis of transcriptome data detected new potential players in response to dioxin exposure in humans E Oshchepkova, Y Sizentsova, D Wiebe, V Mironova, N Kolchanov International Journal of Molecular Sciences 21 (21), 7858, 2020 | 7 | 2020 |
| Fold-change-specific enrichment analysis (FSEA): quantification of transcriptional response magnitude for functional gene groups DS Wiebe, NA Omelyanchuk, AM Mukhin, I Grosse, SA Lashin, ... Genes 11 (4), 434, 2020 | 7 | 2020 |
| Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients AJ Radtke, E Postovalova, A Varlamova, A Bagaev, M Sorokina, ... Cancer cell 42 (3), 444-463. e10, 2024 | 5 | 2024 |
| Method for the Isolation of “RNA-seq-Quality” RNA from Human Intervertebral Discs after Mortar and Pestle Homogenization AA Ivanov, ON Leonova, DS Wiebe, AV Krutko, MM Gridina, VS Fishman, ... Cells 11 (22), 3578, 2022 | 2 | 2022 |
| FoldGO for functional annotation of transcriptome data to identify fold-change-specific GO categories DS Wiebe, AM Mukhin, NA Omelyanchuk, VV Mironova Mathematical Modeling and High-Performance Computing in Bioinformatics …, 2018 | 1 | 2018 |
| Fold-change Specific Enrichment Analysis (FSEA): an approach for functional enrichment analysis of transcriptomic data D Wiebe, N Omelyanchuk, E Zemlyanskaya, V Mironova Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB …, 2022 | | 2022 |
| Integration of ChIP-seq and RNA-seq data in structure-function analysis of cis-regulatory elements V Dolgikh, D Wiebe, V Levitsky, E Zemlyanskaya Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB …, 2022 | | 2022 |
| Developing FoldGO, the tools for multifactorial functional enrichment analysis AM Mukhin, DS Wiebe, I Grosse, SA Lashin, VV Mironova SI Kabanikhin, Professor, Corresponding Member of the RAS, Institute of …, 2018 | | 2018 |
| AUXIN INDUCED EXPRESSION CHANGES DIFFER AMONG FUNCTIONAL GENE GROUPS NA Omelyanchuk, DS Wiebe, VV Mironova Высокопроизводительное секвенирование в геномике, 68-68, 2017 | | 2017 |
| FoldGO-программный комплекс для выявления фолд-специфичных ГО категорий в данных транскриптомных экспериментов ДС Вибе, АМ Мухин, НА Омельянчук, ВВ Миронова | | |
| FoldGO-the software package for fold-change-specific GO terms identification in transcriptome data DS Wiebe, AM Mukhin, NA Omelyanchuk, VV Mironova | | |
