| Superbubbles, ultrabubbles, and cacti B Paten, JM Eizenga, YM Rosen, AM Novak, E Garrison, G Hickey Journal of Computational Biology 25 (7), 649-663, 2018 | 70 | 2018 |
| Picroscope: low-cost system for simultaneous longitudinal biological imaging VT Ly, PV Baudin, P Pansodtee, EA Jung, K Voitiuk, YM Rosen, ... Communications biology 4 (1), 1261, 2021 | 16 | 2021 |
| Modelling haplotypes with respect to reference cohort variation graphs Y Rosen, J Eizenga, B Paten Bioinformatics 33 (14), i118-i123, 2017 | 16 | 2017 |
| The immersive graph genome explorer: Navigating genomics in immersive virtual reality M Kuznetsov, A Elor, S Kurniawan, C Bosworth, Y Rosen, N Heyer, ... 2021 IEEE 9th International Conference on Serious Games and Applications for …, 2021 | 13 | 2021 |
| Cloud-controlled microscopy enables remote project-based biology education in underserved Latinx communities PV Baudin, RE Sacksteder, AK Worthington, K Voitiuk, VT Ly, RN Hoffman, ... Heliyon 8 (11), 2022 | 9 | 2022 |
| Canonical, stable, general mapping using context schemes AM Novak, Y Rosen, D Haussler, B Paten Bioinformatics 31 (22), 3569-3576, 2015 | 9 | 2015 |
| Describing the local structure of sequence graphs Y Rosen, J Eizenga, B Paten Algorithms for Computational Biology: 4th International Conference, AlCoB …, 2017 | 5 | 2017 |
| Internet-connected cortical organoids for project-based stem cell and neuroscience education MAT Elliott, HE Schweiger, A Robbins, S Vera-Choqqueccota, D Ehrlich, ... eneuro 10 (12), 2023 | 4 | 2023 |
| An average-case sublinear forward algorithm for the haploid Li and Stephens model YM Rosen, BJ Paten Algorithms for Molecular Biology 14, 1-12, 2019 | 4 | 2019 |
| Cloud-controlled microscopy enables remote project-based biology education in Latinx communities in the United States and Latin America PV Baudin, RE Sacksteder, AK Worthington, K Voitiuk, VT Ly, RN Hoffman, ... bioRxiv, 2022.08. 05.502091, 2022 | 2 | 2022 |
| Development of a low-cost system for simultaneous longitudinal biological imaging VT Ly, PV Baudin, P Pansodtee, EA Jung, K Voitiuk, YM Rosen, ... BioRxiv, 2021.05. 17.443454, 2021 | 2 | 2021 |
| Comparative effectiveness of combination TACE/ablation vs. monotherapy in hepatocellular carcinoma. A Winer, Y Rosen, F Lu, RS Berman, M Melis, G Miller, HL Pachter, ... Journal of Clinical Oncology 34 (4_suppl), 350-350, 2016 | 1 | 2016 |
| Genetic Site-Aware Three-Dimensional Layout Algorithm for Variation Graphs D Pasha, Y Rosen, M Kuznetsov, B Paten Proceedings of the 14th ACM International Conference on Bioinformatics …, 2023 | | 2023 |
| Statdepth: a package for analysis of functional and pointcloud data using statistical depth J Lehrer, M Teodorescu, Y Rosen arXiv preprint arXiv:2302.13238, 2023 | | 2023 |
| System and method for simultaneous longitudinal biological imaging V Ly, P Baudin, Y Rosen, P Pansodtee, K Voitiuk, D Haussler, ... US Patent App. 17/738,239, 2022 | | 2022 |
| Cloud-controlled microscopy enables remote project-based biology education in underserved Latinx communities N Montellano Duran, PV Baudin, RE Sacksteder, AK Worthington, ... | | 2022 |
| Tools for large and detailed experiments in genomics and tissue development YM Rosen UC Santa Cruz, 2022 | | 2022 |
| An average-case sublinear exact Li and Stephens forward algorithm YM Rosen, BJ Paten bioRxiv, 322396, 2018 | | 2018 |
| Supplement to “Modelling haplotypes with respect to reference cohort variation graphs” Y Rosen, J Eizenga, B Paten | | 2017 |
| 2542: Exosomes from mesenchymal stem cells package anti-inflammatory cytokines in allotransplantation JP Massie, YM Rosen, JR Diaz-Siso, NM Plana, DJ Ceradini Vascularized Composite Allotransplantation 3 (1-2), 25-25, 2016 | | 2016 |
