| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1811* | 2020 |
| The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020 | 909 | 2020 |
| Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-2254. e39, 2021 | 322 | 2021 |
| Clonality inference in multiple tumor samples using phylogeny S Malikic, AW McPherson, N Donmez, CS Sahinalp Bioinformatics 31 (9), 1349-1356, 2015 | 207 | 2015 |
| Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data S Malikic, K Jahn, J Kuipers, SC Sahinalp, N Beerenwinkel Nature communications 10 (1), 2750, 2019 | 134 | 2019 |
| PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ... Genome research 29 (11), 1860-1877, 2019 | 84 | 2019 |
| Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes I Numanagić, S Malikić, M Ford, X Qin, L Toji, M Radovich, TC Skaar, ... Nature communications 9 (1), 828, 2018 | 78 | 2018 |
| Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... BioRxiv, 312041, 2018 | 43 | 2018 |
| Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data I Numanagić, S Malikić, VM Pratt, TC Skaar, DA Flockhart, SC Sahinalp Bioinformatics 31 (12), i27-i34, 2015 | 43 | 2015 |
| A multi-labeled tree dissimilarity measure for comparing “clonal trees” of tumor progression N Karpov, S Malikic, MK Rahman, SC Sahinalp Algorithms for Molecular Biology 14, 1-18, 2019 | 39* | 2019 |
| Clonality inference from single tumor samples using low coverage sequence data N Donmez, S Malikic, AW Wyatt, ME Gleave, CC Collins, SC Sahinalp Research in Computational Molecular Biology: 20th Annual Conference, RECOMB …, 2016 | 35 | 2016 |
| PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem E Sadeqi Azer, F Rashidi Mehrabadi, S Malikić, XC Li, O Bartok, ... Bioinformatics 36 (Supplement_1), i169-i176, 2020 | 21 | 2020 |
| Tumor phylogeny topology inference via deep learning ES Azer, MH Ebrahimabadi, S Malikić, R Khardon, SC Sahinalp Iscience 23 (11), 2020 | 15 | 2020 |
| Identification of conserved evolutionary trajectories in tumors E Hodzic, R Shrestha, S Malikic, CC Collins, K Litchfield, S Turajlic, ... Bioinformatics 36 (Supplement_1), i427-i435, 2020 | 13 | 2020 |
| Collaborative intra-tumor heterogeneity detection S Khakabimamaghani, S Malikic, J Tang, D Ding, R Morin, ... Bioinformatics 35 (14), i379-i388, 2019 | 13 | 2019 |
| Profiles of expressed mutations in single cells reveal subclonal expansion patterns and therapeutic impact of intratumor heterogeneity FR Mehrabadi, KL Marie, E Pérez-Guijarro, S Malikić, ES Azer, HH Yang, ... bioRxiv, 2021.03. 26.437185, 2021 | 10 | 2021 |
| Pervasive intra-tumour heterogeneity and subclonal selection across cancer types S Dentro, I Leshchiner, K Haase, J Wintersinger, A Deshwar, M Tarabichi, ... Cancer Research 78 (13_Supplement), 3000-3000, 2018 | 7 | 2018 |
| Studying the history of tumor evolution from single-cell sequencing data by exploring the space of binary matrices S Malikić, FR Mehrabadi, ES Azer, MH Ebrahimabadi, SC Sahinalp Journal of Computational Biology 28 (9), 857-879, 2021 | 5 | 2021 |
| Fast intratumor heterogeneity inference from single-cell sequencing data C Kızılkale, F Rashidi Mehrabadi, E Sadeqi Azer, E Pérez-Guijarro, ... Nature computational science 2 (9), 577-583, 2022 | 4 | 2022 |
| Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models KDASCS Y. Liu, X. C. Li, F. R. Mehrabadi, A. A. Schäffer, D. Pratt, D. R ... Genome Research 33, 1089-1100, 2023 | 3* | 2023 |
S. Cenk SahinalpSenior Investigator, Cancer Data Science Lab, National Cancer Institute, NIH在 nih.gov 的电子邮件经过验证
