The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He, D Torre, Z Wang, ... Cell systems 6 (1), 13-24, 2018 | 395 | 2018 |
Natural variation in preparation for nutrient depletion reveals a cost–benefit tradeoff J Wang, E Atolia, B Hua, Y Savir, R Escalante-Chong, M Springer PLoS biology 13 (1), e1002041, 2015 | 139 | 2015 |
Galactose metabolic genes in yeast respond to a ratio of galactose and glucose R Escalante-Chong, Y Savir, SM Carroll, JB Ingraham, J Wang, CJ Marx, ... Proceedings of the National Academy of Sciences 112 (5), 1636-1641, 2015 | 137 | 2015 |
A chromatin-based mechanism for limiting divergent noncoding transcription S Marquardt, R Escalante-Chong, N Pho, J Wang, LS Churchman, ... Cell 157 (7), 1712-1723, 2014 | 123 | 2014 |
Advanced bioinformatics rapidly identifies existing therapeutics for patients with coronavirus disease-2019 (COVID-19) J Kim, J Zhang, Y Cha, S Kolitz, J Funt, R Escalante Chong, S Barrett, ... Journal of translational medicine 18, 1-9, 2020 | 84 | 2020 |
Cell freezing protocol suitable for ATAC-Seq on motor neurons derived from human induced pluripotent stem cells P Milani, R Escalante-Chong, BC Shelley, NL Patel-Murray, X Xin, ... Scientific reports 6 (1), 25474, 2016 | 56 | 2016 |
PCSF: An R-package for network-based interpretation of high-throughput data M Akhmedov, A Kedaigle, RE Chong, R Montemanni, F Bertoni, ... PLoS computational biology 13 (7), e1005694, 2017 | 52 | 2017 |
Large-scale transcriptomic analysis reveals that pridopidine reverses aberrant gene expression and activates neuroprotective pathways in the YAC128 HD mouse R Kusko, J Dreymann, J Ross, Y Cha, R Escalante-Chong, ... Molecular Neurodegeneration 13, 1-15, 2018 | 37 | 2018 |
An integrated multi-omic analysis of iPSC-derived motor neurons from C9ORF72 ALS patients H Phatnani, J Kwan, D Sareen, JR Broach, Z Simmons, X Arcila-Londono, ... Iscience 24 (11), 2021 | 27 | 2021 |
Polymorphisms in the yeast galactose sensor underlie a natural continuum of nutrient-decision phenotypes KB Lee, J Wang, J Palme, R Escalante-Chong, B Hua, M Springer PLoS genetics 13 (5), e1006766, 2017 | 23 | 2017 |
Integrity, standards, and QC-related issues with big data in pre-clinical drug discovery JF Brothers II, M Ung, R Escalante-Chong, J Ross, J Zhang, Y Cha, ... Biochemical Pharmacology 152, 84-93, 2018 | 5 | 2018 |
NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency AD Matlock, V Vaibhav, R Holewinski, V Venkatraman, V Dardov, ... Scientific Data 10 (1), 24, 2023 | 4 | 2023 |
A primer on applying AI synergistically with domain expertise to oncology J Kim, R Kusko, B Zeskind, J Zhang, R Escalante-Chong Biochimica et Biophysica Acta (BBA)-Reviews on Cancer 1876 (1), 188548, 2021 | 4 | 2021 |
Metastasis: Leveraging transcriptomics to identify potential therapeutics M Ung, JM Funt, AC Lysaght, J Zhang, R Escalante-Chong, G Koytiger, ... Cancer Research 78 (13_Supplement), 5177-5177, 2018 | 2 | 2018 |
Cachexia: Leveraging transcriptomics to identify potential therapeutics M Ung, KD Fowler, JM Funt, R Escalante-Chong, G Koytiger, S Kolitz, ... Cancer Research 78 (13_Supplement), 1509-1509, 2018 | 2 | 2018 |
Loss of the Sigma-1 receptor disrupts pridopidine-induced gene expression (P4. 048) J Dreymann, M Geva, J Ross, Y Cha, R Kusko, R Escalante-Chong, ... Neurology 90 (15_supplement), P4. 048, 2018 | 1 | 2018 |
Yeast as a ratio sensor: the ratio of glucose and galactose determines cell state, 1 Y Savir, R Escalante-Chong, M Springer | 1 | 2005 |
An integrated multi-omic analysis of iPSC-derived motor neurons from C9ORF72 ALS patients NeuroLINCS Consortium, L Ornelas, E Gomez, L Panther, A Frank, S Lei, ... bioRxiv, 2020.11. 01.362269, 2020 | | 2020 |
Appendix B PCSF: an R-Package for Network-Based Interpretation of Highthroughput Data M Akhmedov, A Kedaigle, RE Chong, R Montemanni, F Bertoni Integrating Omics Data: A New Software Tool and its Use in Implicating …, 2018 | | 2018 |
Abstract B027: A meta-metastasis analysis identifies pan-cancer markers and therapeutic targets KD Fowler, JM Funt, S Kolitz, J Zhang, M Ung, R Escalante-Chong, ... Molecular Cancer Therapeutics 17 (1_Supplement), B027-B027, 2018 | | 2018 |