A-to-I editing in human miRNAs is enriched in seed sequence, influenced by sequence contexts and significantly hypoedited in glioblastoma multiforme D Paul, AN Sinha, A Ray, M Lal, S Nayak, A Sharma, B Mehani, ... Scientific Reports 7 (1), 2466, 2017 | 78 | 2017 |
Salt-bridge Networks within Globular and Disordered Proteins-Characterizing Trends for Designable Interactions S Basu, D Mukharjee Journal of Molecular Modeling 23, 206, 2017 | 36 | 2017 |
Analysis of stacking overlap in nucleic acid structures: algorithm and application PK Pingali, S Halder, D Mukherjee, S Basu, R Banerjee, D Choudhury, ... Journal of computer-aided molecular design 28, 851-867, 2014 | 26 | 2014 |
Comparative analysis of 16S rRNA signature sequences of the genus Idiomarina and Idiomarina woesei sp. nov., a novel marine bacterium isolated from the Andaman Sea A Poddar, RT Lepcha, D Mukherjee, D Bhattacharyya, SK Das Research in microbiology 165 (7), 501-507, 2014 | 16 | 2014 |
RNAHelix: computational modeling of nucleic acid structures with Watson–Crick and non-canonical base pairs D Bhattacharyya, S Halder, S Basu, D Mukherjee, P Kumar, M Bansal Journal of computer-aided molecular design 31 (2), 219-235, 2017 | 10 | 2017 |
EnCPdock: a web-interface for direct conjoint comparative analyses of complementarity and binding energetics in inter-protein associations G Biswas, D Mukherjee, N Dutta, P Ghosh, S Basu Journal of Molecular Modeling 29 (8), 239, 2023 | 6 | 2023 |
Stacking geometry between two sheared Watson-Crick basepairs: Computational chemistry and bioinformatics based prediction S Maiti, D Mukherjee, P Roy, J Chakrabarti, D Bhattacharyya Biochimica et Biophysica Acta (BBA)-General Subjects 1864 (7), 129600, 2020 | 5 | 2020 |
Rnabpdb: Molecular modeling of rna structure—From base pair analysis in crystals to structure prediction D Mukherjee, S Maiti, PK Gouda, R Sharma, P Roy, D Bhattacharyya Interdisciplinary Sciences: Computational Life Sciences 14 (3), 759-774, 2022 | 4 | 2022 |
Combining Complementarity and Binding Energetics in the Assessment of Protein Interactions: EnCPdock—A Practical Manual G Biswas, D Mukherjee, S Basu Journal of Computational Biology, 2024 | | 2024 |
Intrinsic structural variability in GNRA-like tetraloops: insight from molecular dynamics simulation D Mukherjee, D Bhattacharyya Journal of Molecular Modeling 23, 300, 2017 | | 2017 |