| TRRUST: a reference database of human transcriptional regulatory interactions H Han, H Shim, D Shin, JE Shim, Y Ko, J Shin, H Kim, A Cho, E Kim, ... Scientific reports 5 (1), 11432, 2015 | 421 | 2015 |
| AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species T Lee, S Yang, E Kim, Y Ko, S Hwang, J Shin, JE Shim, H Shim, H Kim, ... Nucleic acids research 43 (D1), D996-D1002, 2015 | 160 | 2015 |
| Predicting genetic modifier loci using functional gene networks I Lee, B Lehner, T Vavouri, J Shin, AG Fraser, EM Marcotte Genome research 20 (8), 1143-1153, 2010 | 108 | 2010 |
| YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae H Kim, J Shin, E Kim, H Kim, S Hwang, JE Shim, I Lee Nucleic acids research 42 (D1), D731-D736, 2014 | 96 | 2014 |
| RiceNet v2: an improved network prioritization server for rice genes T Lee, T Oh, S Yang, J Shin, S Hwang, CY Kim, H Kim, H Shim, JE Shim, ... Nucleic acids research 43 (W1), W122-W127, 2015 | 87 | 2015 |
| WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans A Cho, J Shin, S Hwang, C Kim, H Shim, H Kim, H Kim, I Lee Nucleic acids research 42 (W1), W76-W82, 2014 | 72 | 2014 |
| Towards understanding how molecular networks evolve in plants L Chae, I Lee, J Shin, SY Rhee Current opinion in plant biology 15 (2), 177-184, 2012 | 68 | 2012 |
| Identification of FMR1-regulated molecular networks in human neurodevelopment M Li, J Shin, RD Risgaard, MJ Parries, J Wang, D Chasman, S Liu, S Roy, ... Genome research 30 (3), 361-374, 2020 | 64 | 2020 |
| EcoliNet: a database of cofunctional gene network for Escherichia coli H Kim, JE Shim, J Shin, I Lee Database 2015, bav001, 2015 | 43 | 2015 |
| A novel inhibitor of apoptosis protein (IAP)-interacting protein, Vestigial-like (Vgl)-4, counteracts apoptosis-inhibitory function of IAPs by nuclear sequestration HS Jin, HS Park, JH Shin, DH Kim, SH Jun, CJ Lee, TH Lee Biochemical and biophysical research communications 412 (3), 454-459, 2011 | 35 | 2011 |
| Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans H Kim, KW Jung, S Maeng, YL Chen, J Shin, JE Shim, S Hwang, ... Scientific reports 5 (1), 8767, 2015 | 33 | 2015 |
| Complementarity between distance-and probability-based methods of gene neighbourhood identification for pathway reconstruction J Shin, T Lee, H Kim, I Lee Molecular BioSystems 10 (1), 24-29, 2013 | 25 | 2013 |
| Co-inheritance analysis within the domains of life substantially improves network inference by phylogenetic profiling J Shin, I Lee PLoS One 10 (9), e0139006, 2015 | 22 | 2015 |
| Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder K Huang, Y Wu, J Shin, Y Zheng, AF Siahpirani, Y Lin, Z Ni, J Chen, J You, ... PLoS genetics 17 (2), e1009309, 2021 | 18 | 2021 |
| FlyNet: a versatile network prioritization server for the Drosophila community J Shin, S Yang, E Kim, CY Kim, H Shim, A Cho, H Kim, S Hwang, JE Shim, ... Nucleic acids research 43 (W1), W91-W97, 2015 | 17 | 2015 |
| Identifying strengths and weaknesses of methods for computational network inference from single-cell RNA-seq data SG McCalla, A Fotuhi Siahpirani, J Li, S Pyne, M Stone, V Periyasamy, ... G3: Genes, Genomes, Genetics 13 (3), jkad004, 2023 | 16 | 2023 |
| Pathway-specific protein domains are predictive for human diseases JE Shim, JH Kim, J Shin, JE Lee, I Lee PLoS computational biology 15 (5), e1007052, 2019 | 13 | 2019 |
| Modular derivation of diverse, regionally discrete human posterior CNS neurons enables discovery of transcriptomic patterns NR Iyer, J Shin, S Cuskey, Y Tian, NR Nicol, TE Doersch, F Seipel, ... Science advances 8 (39), eabn7430, 2022 | 12 | 2022 |
| Identifying strengths and weaknesses of methods for computational network inference from single cell RNA-seq data M Stone, J Li, SG McCalla, AF Siahpirani, V Periyasamy, J Shin, S Roy BioRxiv, 2021.06. 01.446671, 2021 | 12 | 2021 |
| Data integration for inferring context-specific gene regulatory networks B Baur, J Shin, S Zhang, S Roy Current opinion in systems biology 23, 38-46, 2020 | 10 | 2020 |
