Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 6051 | 2015 |
Human DNA methylomes at base resolution show widespread epigenomic differences R Lister, M Pelizzola, RH Dowen, RD Hawkins, G Hon, J Tonti-Filippini, ... nature 462 (7271), 315-322, 2009 | 5250 | 2009 |
Global epigenomic reconfiguration during mammalian brain development R Lister, EA Mukamel, JR Nery, M Urich, CA Puddifoot, ND Johnson, ... Science 341 (6146), 1237905, 2013 | 1925 | 2013 |
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells R Lister, M Pelizzola, YS Kida, RD Hawkins, JR Nery, G Hon, ... Nature 471 (7336), 68-73, 2011 | 1812 | 2011 |
Cistrome and epicistrome features shape the regulatory DNA landscape RC O’Malley, SC Huang, L Song, MG Lewsey, A Bartlett, JR Nery, M Galli, ... Cell 165 (5), 1280-1292, 2016 | 1296 | 2016 |
Widespread dynamic DNA methylation in response to biotic stress RH Dowen, M Pelizzola, RJ Schmitz, R Lister, JM Dowen, JR Nery, ... Proceedings of the National Academy of Sciences 109 (32), E2183-E2191, 2012 | 1053 | 2012 |
Epigenomic analysis of multilineage differentiation of human embryonic stem cells W Xie, MD Schultz, R Lister, Z Hou, N Rajagopal, P Ray, JW Whitaker, ... Cell 153 (5), 1134-1148, 2013 | 775 | 2013 |
Epigenomic signatures of neuronal diversity in the mammalian brain A Mo, EA Mukamel, FP Davis, C Luo, GL Henry, S Picard, MA Urich, ... Neuron 86 (6), 1369-1384, 2015 | 664 | 2015 |
Human body epigenome maps reveal noncanonical DNA methylation variation MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ... Nature 523 (7559), 212-216, 2015 | 650 | 2015 |
Epigenomic diversity in a global collection of Arabidopsis thaliana accessions T Kawakatsu, SSC Huang, F Jupe, E Sasaki, RJ Schmitz, MA Urich, ... Cell 166 (2), 492-505, 2016 | 635 | 2016 |
Comparison of the transcriptional landscapes between human and mouse tissues S Lin, Y Lin, JR Nery, MA Urich, A Breschi, CA Davis, A Dobin, C Zaleski, ... Proceedings of the National Academy of Sciences 111 (48), 17224-17229, 2014 | 597 | 2014 |
Patterns of population epigenomic diversity RJ Schmitz, MD Schultz, MA Urich, JR Nery, M Pelizzola, O Libiger, A Alix, ... Nature 495 (7440), 193-198, 2013 | 591 | 2013 |
Cryptochromes interact directly with PIFs to control plant growth in limiting blue light UV Pedmale, SC Huang, M Zander, BJ Cole, J Hetzel, K Ljung, PAB Reis, ... Cell 164 (1), 233-245, 2016 | 552 | 2016 |
Molecular criteria for defining the naive human pluripotent state TW Theunissen, M Friedli, Y He, E Planet, RC O’Neil, S Markoulaki, ... Cell stem cell 19 (4), 502-515, 2016 | 508 | 2016 |
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex C Luo, CL Keown, L Kurihara, J Zhou, Y He, J Li, R Castanon, J Lucero, ... Science 357 (6351), 600-604, 2017 | 476 | 2017 |
A transcription factor hierarchy defines an environmental stress response network L Song, SC Huang, A Wise, R Castanon, JR Nery, H Chen, M Watanabe, ... Science 354 (6312), aag1550, 2016 | 437 | 2016 |
Integration of omic networks in a developmental atlas of maize JW Walley, RC Sartor, Z Shen, RJ Schmitz, KJ Wu, MA Urich, JR Nery, ... Science 353 (6301), 814-818, 2016 | 419 | 2016 |
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis KN Chang, S Zhong, MT Weirauch, G Hon, M Pelizzola, H Li, SC Huang, ... elife 2, e00675, 2013 | 403 | 2013 |
Comparative cellular analysis of motor cortex in human, marmoset and mouse TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ... Nature 598 (7879), 111-119, 2021 | 399 | 2021 |
Mapping genome-wide transcription-factor binding sites using DAP-seq A Bartlett, RC O'Malley, SC Huang, M Galli, JR Nery, A Gallavotti, ... Nature protocols 12 (8), 1659-1672, 2017 | 387 | 2017 |