The PMDB protein model database T Castrignano, PDO De Meo, D Cozzetto, IG Talamo, A Tramontano Nucleic acids research 34 (suppl_1), D306-D309, 2006 | 354 | 2006 |
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing DS Horner, G Pavesi, T Castrignano, PDO De Meo, S Liuni, M Sammeth, ... Briefings in bioinformatics 11 (2), 181-197, 2010 | 253 | 2010 |
Developmental factor IRF6 exhibits tumor suppressor activity in squamous cell carcinomas E Botti, G Spallone, F Moretti, B Marinari, V Pinetti, S Galanti, ... Proceedings of the National Academy of Sciences 108 (33), 13710-13715, 2011 | 168 | 2011 |
Transcriptional regulation of miR-224 upregulated in human HCCs by NFκB inflammatory pathways C Scisciani, S Vossio, F Guerrieri, V Schinzari, R De Iaco, PDO de Meo, ... Journal of hepatology 56 (4), 855-861, 2012 | 164 | 2012 |
SpliceAid-F: a database of human splicing factors and their RNA-binding sites M Giulietti, F Piva, M D’Antonio, P D’Onorio De Meo, D Paoletti, ... Nucleic acids research 41 (D1), D125-D131, 2013 | 137 | 2013 |
RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application M D'Antonio, P D'Onorio De Meo, M Pallocca, E Picardi, AM D'Erchia, ... BMC genomics 16, 1-11, 2015 | 86 | 2015 |
Che‐1‐induced inhibition of mTOR pathway enables stress‐induced autophagy A Desantis, T Bruno, V Catena, F De Nicola, F Goeman, S Iezzi, C Sorino, ... The EMBO Journal 34 (9), 1214-1230, 2015 | 77 | 2015 |
MitoZoa: a curated mitochondrial genome database of metazoans for comparative genomics studies R Lupi, PDO de Meo, E Picardi, M D’Antonio, D Paoletti, T Castrignanò, ... Mitochondrion 10 (2), 192-199, 2010 | 63 | 2010 |
WEP: a high-performance analysis pipeline for whole-exome data M D'Antonio, P D'Onorio De Meo, D Paoletti, B Elmi, M Pallocca, N Sanna, ... BMC bioinformatics 14, 1-11, 2013 | 59 | 2013 |
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa P D'Onorio de Meo, M D'Antonio, F Griggio, R Lupi, M Borsani, G Pavesi, ... Nucleic acids research 40 (D1), D1168-D1172, 2012 | 54 | 2012 |
VDR primary targets by genome-wide transcriptional profiling F Goeman, F De Nicola, PDO De Meo, M Pallocca, B Elmi, T Castrignanò, ... The Journal of steroid biochemistry and molecular biology 143, 348-356, 2014 | 50 | 2014 |
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ... Nucleic acids research 39 (suppl_1), D80-D85, 2010 | 47 | 2010 |
Che-1 modulates the decision between cell cycle arrest and apoptosis by its binding to p53 A Desantis, T Bruno, V Catena, F De Nicola, F Goeman, S Iezzi, C Sorino, ... Cell death & disease 6 (5), e1764-e1764, 2015 | 41 | 2015 |
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization T Castrignano, R Rizzi, IG Talamo, PDO De Meo, A Anselmo, P Bonizzoni, ... Nucleic Acids Research 34 (suppl_2), W440-W443, 2006 | 41 | 2006 |
The MEPS server for identifying protein conformational epitopes T Castrignanò, PDO De Meo, D Carrabino, M Orsini, M Floris, ... BMC bioinformatics 8, 1-5, 2007 | 37 | 2007 |
Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells F Chiani, C Iannone, R Negri, D Paoletti, M D’Antonio, PD De Meo, ... Database 2009, bap007, 2009 | 20 | 2009 |
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags T Castrignano, PDO De Meo, G Grillo, S Liuni, F Mignone, IG Talamo, ... Bioinformatics 22 (4), 497-499, 2006 | 11 | 2006 |
Gaussian grid: a computational chemistry experiment over a web service-oriented grid N Sanna, T Castrignano, PDO De Meo, D Carrabino, A Grandi, G Morelli, ... Theoretical Chemistry Accounts 117, 1145-1152, 2007 | 6 | 2007 |
A high performance grid-web service framework for the identification of ‘conserved sequence tags’ PDO De Meo, D Carrabino, N Sanna, T Castrignano, G Grillo, F Licciulli, ... Future Generation Computer Systems 23 (3), 371-381, 2007 | 4 | 2007 |
Graph-based data integration in EUDAT data infrastructure V Bunakov, PDO De Meo, S Kindermann, A Queralt, J Rybicki ALLDATA 2016, 63, 2016 | 3 | 2016 |