| Initial sequencing and comparative analysis of the mouse genome European Bioinformatics Institute: Birney Ewan 3 Goldman Nick 3 Kasprzyk ... Nature 420 (6915), 520-562, 2002 | 8575 | 2002 |
| Genome sequence of the Brown Norway rat yields insights into mammalian evolution University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ... Nature 428 (6982), 493-521, 2004 | 2533 | 2004 |
| PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry B Ma, K Zhang, C Hendrie, C Liang, M Li, A Doherty‐Kirby, G Lajoie Rapid communications in mass spectrometry 17 (20), 2337-2342, 2003 | 1655 | 2003 |
| The similarity metric M Li, X Chen, X Li, B Ma, PMB Vitányi IEEE transactions on Information Theory 50 (12), 3250-3264, 2004 | 1644 | 2004 |
| PEAKS DB: De Novo sequencing assisted database search for sensitive and accurate peptide identification J Zhang, L Xin, B Shan, W Chen, M Xie, D Yuen, W Zhang, Z Zhang, ... Molecular & Cellular Proteomics, 2011 | 1145 | 2011 |
| PatternHunter: faster and more sensitive homology search B Ma, J Tromp, M Li Bioinformatics 18 (3), 440-445, 2002 | 1137 | 2002 |
| ZOOM! Zillions of oligos mapped H Lin, Z Zhang, MQ Zhang, B Ma, M Li Bioinformatics 24 (21), 2431-2437, 2008 | 327 | 2008 |
| Distinguishing string selection problems JK Lanctot, M Li, B Ma, S Wang, L Zhang Information and Computation 185 (1), 41-55, 2003 | 313 | 2003 |
| DNACompress: fast and effective DNA sequence compression X Chen, M Li, B Ma, J Tromp Bioinformatics 18 (12), 1696-1698, 2002 | 307 | 2002 |
| PatternHunter II: Highly sensitive and fast homology search M Li, B Ma, D Kisman, J Tromp Journal of bioinformatics and computational biology 2 (03), 417-439, 2004 | 304 | 2004 |
| SPIDER: software for protein identification from sequence tags with de novo sequencing error Y Han, B Ma, K Zhang Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004 …, 2004 | 293 | 2004 |
| A general edit distance between RNA structures T Jiang, G Lin, B Ma, K Zhang Journal of computational biology 9 (2), 371-388, 2002 | 268 | 2002 |
| On the closest string and substring problems M Li, B Ma, L Wang Journal of the ACM (JACM) 49 (2), 157-171, 2002 | 262 | 2002 |
| Novor: real-time peptide de novo sequencing software B Ma Journal of the American Society for Mass Spectrometry 26 (11), 1885-1894, 2015 | 231 | 2015 |
| PeaksPTM: mass spectrometry-based identification of peptides with unspecified modifications X Han, L He, L Xin, B Shan, B Ma Journal of proteome research 10 (7), 2930-2936, 2011 | 219 | 2011 |
| De novo sequencing and homology searching B Ma, R Johnson Molecular & cellular proteomics 11 (2), 2012 | 217 | 2012 |
| From gene trees to species trees B Ma, M Li, L Zhang SIAM Journal on Computing 30 (3), 729-752, 2000 | 210 | 2000 |
| On the similarity metric and the distance metric S Chen, B Ma, K Zhang Theoretical Computer Science 410 (24-25), 2365-2376, 2009 | 194 | 2009 |
| Chain letters and evolutionary histories CH Bennett, M Li, B Ma SCIENTIFIC AMERICAN-AMERICAN EDITION- 288 (6), 76-81, 2003 | 176 | 2003 |
| Finding similar regions in many strings M Li, B Ma, L Wang Proceedings of the thirty-first annual ACM symposium on Theory of computing …, 1999 | 175 | 1999 |
