| DMAP: a connectivity map database to enable identification of novel drug repositioning candidates H Huang, T Nguyen, S Ibrahim, S Shantharam, Z Yue, JY Chen BMC bioinformatics 16, 1-11, 2015 | 67 | 2015 |
| Proteomic characterization reveals that MMP-3 correlates with bronchiolitis obliterans syndrome following allogeneic hematopoietic cell and lung transplantation X Liu, Z Yue, J Yu, E Daguindau, K Kushekhar, Q Zhang, Y Ogata, ... American Journal of Transplantation 16 (8), 2342-2351, 2016 | 36 | 2016 |
| Repositioning drugs by targeting network modules: a Parkinson’s disease case study Z Yue, I Arora, EY Zhang, V Laufer, SL Bridges, JY Chen BMC bioinformatics 18, 17-30, 2017 | 32 | 2017 |
| Metabolic alterations mediated by STAT3 promotes drug persistence in CML SB Patel, T Nemkov, D Stefanoni, GA Benavides, MA Bassal, BL Crown, ... Leukemia 35 (12), 3371-3382, 2021 | 28 | 2021 |
| PAGER: constructing PAGs and new PAG–PAG relationships for network biology Z Yue, MM Kshirsagar, T Nguyen, C Suphavilai, MT Neylon, L Zhu, ... Bioinformatics 31 (12), i250-i257, 2015 | 27 | 2015 |
| A nonredundant role for T cell-derived interleukin 22 in antibacterial defense of colonic crypts CL Zindl, SJ Witte, VA Laufer, M Gao, Z Yue, KM Janowski, B Cai, BF Frey, ... Immunity 55 (3), 494-511. e11, 2022 | 23 | 2022 |
| PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology Z Yue, Q Zheng, MT Neylon, M Yoo, J Shin, Z Zhao, AC Tan, JY Chen Nucleic acids research 46 (D1), D668-D676, 2018 | 20 | 2018 |
| PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies Z Yue, E Zhang, C Xu, S Khurana, N Batra, SDH Dang, JJ Cimino, ... Nucleic acids research 49 (D1), D589-D599, 2021 | 11 | 2021 |
| An in vivo model of glioblastoma radiation resistance identifies long noncoding RNAs and targetable kinases CT Stackhouse, JC Anderson, Z Yue, T Nguyen, NJ Eustace, CP Langford, ... JCI insight 7 (16), 2022 | 10 | 2022 |
| BEERE: a web server for biomedical entity expansion, ranking and explorations Z Yue, CD Willey, AB Hjelmeland, JY Chen Nucleic Acids Research 47 (W1), W578-W586, 2019 | 10 | 2019 |
| Mechanisms of radiation resistance in Deinococcus radiodurans R1 revealed by the reconstruction of gene regulatory network using bayesian network approach P Wan, Z Yue, Z Xie, Q Gao, M Yu, Z Yang, J Huang J Proteomics Bioinform S 6, 2, 2013 | 9 | 2013 |
| PAGER Web APP: An interactive, online gene set and network interpretation tool for functional genomics Z Yue, R Slominski, S Bharti, JY Chen Frontiers in Genetics, 744, 2022 | 7 | 2022 |
| WIPER: Weighted in‐Path Edge Ranking for biomolecular association networks Z Yue, T Nguyen, E Zhang, J Zhang, JY Chen Quantitative Biology 7 (4), 313-326, 2019 | 6 | 2019 |
| WINNER: A network biology tool for biomolecular characterization and prioritization T Nguyen, Z Yue, R Slominski, R Welner, J Zhang, JY Chen Frontiers in Big Data 5, 1016606, 2022 | 5 | 2022 |
| “Super Gene Set” Causal Relationship Discovery from Functional Genomics Data Z Yue, MT Neylon, T Nguyen, T Ratliff, JY Chen IEEE/ACM transactions on computational biology and bioinformatics 15 (6 …, 2018 | 4 | 2018 |
| SLDR: a computational technique to identify novel genetic regulatory relationships Z Yue, P Wan, H Huang, Z Xie, JY Chen BMC bioinformatics 15, 1-16, 2014 | 4 | 2014 |
| Graft-versus-host disease–free antitumoral signature after allogeneic donor lymphocyte injection identified by proteomics and systems biology X Liu, Z Yue, Y Cao, L Taylor, Q Zhang, SW Choi, S Hanash, S Ito, ... JCO precision oncology 3, 1-11, 2019 | 3 | 2019 |
| DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative features Z Weng, Z Yue, Y Zhu, JY Chen Bioinformatics 38 (Supplement_1), i359-i368, 2022 | 2 | 2022 |
| Statistical enrichment analysis of samples: A general-purpose tool to annotate metadata neighborhoods of biological samples TM Nguyen, S Bharti, Z Yue, CD Willey, JY Chen Frontiers in big Data 4, 725276, 2021 | 2 | 2021 |
| Biological Network Mining Z Yue, D Yan, G Guo, JY Chen Modeling Transcriptional Regulation, 139-151, 2021 | 2 | 2021 |
Jake Y. Chen, PhD, FACMI, FAIMBEUniversity of Alabama at Birmingham (UAB) School of Medicine在 uab.edu 的电子邮件经过验证
