Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq) JB Lucks, SA Mortimer, C Trapnell, S Luo, S Aviran, GP Schroth, ... Proceedings of the National Academy of Sciences 108 (27), 11063-11068, 2011 | 476 | 2011 |
Cell-free biosensors for rapid detection of water contaminants JK Jung, KK Alam, MS Verosloff, DA Capdevila, M Desmau, PR Clauer, ... Nature biotechnology 38 (12), 1451-1459, 2020 | 326 | 2020 |
Versatile RNA-sensing transcriptional regulators for engineering genetic networks JB Lucks, L Qi, VK Mutalik, D Wang, AP Arkin Proceedings of the National Academy of Sciences 108 (21), 8617-8622, 2011 | 286 | 2011 |
Creating small transcription activating RNAs J Chappell, MK Takahashi, JB Lucks Nature chemical biology 11 (3), 214-220, 2015 | 267 | 2015 |
Rationally designed families of orthogonal RNA regulators of translation VK Mutalik, L Qi, JC Guimaraes, JB Lucks, AP Arkin Nature chemical biology 8 (5), 447-454, 2012 | 205 | 2012 |
Cotranscriptional folding of a riboswitch at nucleotide resolution KE Watters, EJ Strobel, AM Yu, JT Lis, JB Lucks Nature structural & molecular biology 23 (12), 1124-1131, 2016 | 185 | 2016 |
Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription–translation (TX-TL) systems MK Takahashi, J Chappell, CA Hayes, ZZ Sun, J Kim, V Singhal, ... ACS synthetic biology 4 (5), 503-515, 2015 | 177 | 2015 |
High-throughput determination of RNA structures EJ Strobel, AM Yu, JB Lucks Nature Reviews Genetics 19 (10), 615-634, 2018 | 175 | 2018 |
A renaissance in RNA synthetic biology: new mechanisms, applications and tools for the future J Chappell, KE Watters, MK Takahashi, JB Lucks Current opinion in chemical biology 28, 47-56, 2015 | 172 | 2015 |
Computational design of small transcription activating RNAs for versatile and dynamic gene regulation J Chappell, A Westbrook, M Verosloff, JB Lucks Nature communications 8 (1), 1051, 2017 | 169 | 2017 |
SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing D Loughrey, KE Watters, AH Settle, JB Lucks Nucleic acids research 42 (21), e165-e165, 2014 | 161 | 2014 |
Crystallography on curved surfaces V Vitelli, JB Lucks, DR Nelson Proceedings of the National Academy of Sciences 103 (33), 12323-12328, 2006 | 160 | 2006 |
Why on earth?: Evaluating hypotheses about the physiological functions of human geophagy SL Young, PW Sherman, JB Lucks, GH Pelto The Quarterly review of biology 86 (2), 97-120, 2011 | 159 | 2011 |
Point-of-Use Detection of Environmental Fluoride via a Cell-Free Riboswitch-Based Biosensor W Thavarajah, AD Silverman, MS Verosloff, N Kelley-Loughnane, ... ACS synthetic biology 9 (1), 10-18, 2019 | 155 | 2019 |
Toward scalable parts families for predictable design of biological circuits JB Lucks, L Qi, WR Whitaker, AP Arkin Current opinion in microbiology 11 (6), 567-573, 2008 | 153 | 2008 |
Characterizing and prototyping genetic networks with cell-free transcription–translation reactions MK Takahashi, CA Hayes, J Chappell, ZZ Sun, RM Murray, V Noireaux, ... Methods 86, 60-72, 2015 | 140 | 2015 |
Deconstructing Cell-Free Extract Preparation for in Vitro Activation of Transcriptional Genetic Circuitry AD Silverman, N Kelley-Loughnane, JB Lucks, MC Jewett ACS synthetic biology 8 (2), 403-414, 2018 | 136 | 2018 |
Modeling and automation of sequencing-based characterization of RNA structure S Aviran, C Trapnell, JB Lucks, SA Mortimer, S Luo, GP Schroth, ... Proceedings of the National Academy of Sciences 108 (27), 11069-11074, 2011 | 131 | 2011 |
De novo-designed translation-repressing riboregulators for multi-input cellular logic J Kim, Y Zhou, PD Carlson, M Teichmann, S Chaudhary, FC Simmel, ... Nature chemical biology 15 (12), 1173-1182, 2019 | 127 | 2019 |
An RNA Mapping DataBase for curating RNA structure mapping experiments P Cordero, JB Lucks, R Das Bioinformatics 28 (22), 3006-3008, 2012 | 117 | 2012 |