受强制性开放获取政策约束的文章 - Sjoerd de Vries了解详情
无法在其他位置公开访问的文章：2 篇
iATTRACT: Simultaneous global and local interface optimization for protein–protein docking refinement
CEM Schindler, SJ de Vries, M Zacharias
Proteins: Structure, Function, and Bioinformatics 83 (2), 248-258, 2015
强制性开放获取政策： German Research Foundation
Flexible docking and refinement with a coarse‐grained protein model using ATTRACT
S de Vries, M Zacharias
Proteins: Structure, Function, and Bioinformatics 81 (12), 2167-2174, 2013
强制性开放获取政策： German Research Foundation, European Commission
可在其他位置公开访问的文章：25 篇
The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ...
Journal of molecular biology 428 (4), 720-725, 2016
强制性开放获取政策： Netherlands Organisation for Scientific Research, European Commission
The pepATTRACT web server for blind, large-scale peptide–protein docking
SJ de Vries, J Rey, CEM Schindler, M Zacharias, P Tuffery
Nucleic Acids Research 45 (W1), W361-W364, 2017
强制性开放获取政策： National Institute of Health and Medical Research, France
A web interface for easy flexible protein-protein docking with ATTRACT
SJ de Vries, CEM Schindler, IC de Beauchêne, M Zacharias
Biophysical journal 108 (3), 462-465, 2015
强制性开放获取政策： German Research Foundation
Blind testing of routine, fully automated determination of protein structures from NMR data
A Rosato, JM Aramini, C Arrowsmith, A Bagaria, D Baker, A Cavalli, ...
Structure 20 (2), 227-236, 2012
强制性开放获取政策： US National Institutes of Health, German Research Foundation
SeamDock: an interactive and collaborative online docking resource to assist small compound molecular docking
S Murail, SJ De Vries, J Rey, G Moroy, P Tufféry
Frontiers in Molecular Biosciences 8, 716466, 2021
强制性开放获取政策： National Institute of Health and Medical Research, France, Agence Nationale …
Data‐driven homology modelling of P‐glycoprotein in the ATP‐bound state indicates flexibility of the transmembrane domains
T Stockner, SJ de Vries, AMJJ Bonvin, GF Ecker, P Chiba
The FEBS journal 276 (4), 964-972, 2009
强制性开放获取政策： Austrian Science Fund
PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution
J Rey, S Murail, S de Vries, P Derreumaux, P Tuffery
Nucleic Acids Research 51 (W1), W432-W437, 2023
强制性开放获取政策： National Institute of Health and Medical Research, France, Agence Nationale …
DaReUS-Loop: accurate loop modeling using fragments from remote or unrelated proteins
Y Karami, F Guyon, S De Vries, P Tufféry
Scientific reports 8 (1), 13673, 2018
强制性开放获取政策： National Institute of Health and Medical Research, France
DaReUS-Loop: a web server to model multiple loops in homology models
Y Karami, J Rey, G Postic, S Murail, P Tufféry, SJ De Vries
Nucleic Acids Research 47 (W1), W423-W428, 2019
强制性开放获取政策： National Institute of Health and Medical Research, France, Agence Nationale …
Protein‐protein and peptide‐protein docking and refinement using ATTRACT in CAPRI
CEM Schindler, I Chauvot de Beauchêne, SJ de Vries, M Zacharias
Proteins: Structure, Function, and Bioinformatics 85 (3), 391-398, 2017
强制性开放获取政策： German Research Foundation
Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins
IC de Beauchene, SJ de Vries, M Zacharias
Nucleic acids research 44 (10), 4565-4580, 2016
强制性开放获取政策： German Research Foundation
Binding site identification and flexible docking of single stranded RNA to proteins using a fragment-based approach
I Chauvot de Beauchene, SJ de Vries, M Zacharias
PLoS computational biology 12 (1), e1004697, 2016
强制性开放获取政策： German Research Foundation
Cryo-EM data are superior to contact and interface information in integrative modeling
SJ de Vries, IC de Beauchêne, CEM Schindler, M Zacharias
Biophysical journal 110 (4), 785-797, 2016
强制性开放获取政策： German Research Foundation, Leibniz Association, European Commission
Coarse‐grained and atomic resolution biomolecular docking with the ATTRACT approach
G Glashagen, S de Vries, U Uciechowska‐Kaczmarzyk, SA Samsonov, ...
Proteins: Structure, Function, and Bioinformatics 88 (8), 1018-1028, 2020
强制性开放获取政策： German Research Foundation
Rapid design of knowledge-based scoring potentials for enrichment of near-native geometries in protein-protein docking
A Sasse, SJ de Vries, CEM Schindler, IC de Beauchêne, M Zacharias
PloS one 12 (1), e0170625, 2017
强制性开放获取政策： German Research Foundation
MTMDAT-HADDOCK: high-throughput, protein complex structure modeling based on limited proteolysis and mass spectrometry
J Hennig, SJ de Vries, KDM Hennig, L Randles, KJ Walters, ...
BMC structural biology 12, 1-11, 2012
强制性开放获取政策： Swedish Research Council
Exploring a structural data mining approach to design linkers for head-to-tail peptide cyclization
Y Karami, S Murail, J Giribaldi, B Lefranc, F Defontaine, O Lesouhaitier, ...
Journal of Chemical Information and Modeling 63 (20), 6436-6450, 2023
强制性开放获取政策： National Institute of Health and Medical Research, France, Agence Nationale …
HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses
A Kravchenko, SJ De Vries, M Smaïl-Tabbone, I Chauvot de Beauchene
BMC bioinformatics 25 (1), 129, 2024
强制性开放获取政策： European Commission
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