Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature Medicine, 1-14, 2021 | 561* | 2021 |
Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics, 1-23, 2023 | 282 | 2023 |
AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution H Aliee, FJ Theis Cell Systems 12 (7), 706-715. e4, 2021 | 72 | 2021 |
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ... NeurIPS 2021 Track Datasets and Benchmarks, 2021 | 71 | 2021 |
A new time-independent reliability importance measure E Borgonovo, H Aliee, M Glaß, J Teich European Journal of Operational Research 254 (2), 427-442, 2016 | 64 | 2016 |
A fast and accurate fault tree analysis based on stochastic logic implemented on field-programmable gate arrays H Aliee, HR Zarandi IEEE Transactions on Reliability 62 (1), 13-22, 2013 | 58 | 2013 |
Origin and function of activated fibroblast states during zebrafish heart regeneration B Hu, S Lelek, B Spanjaard, H El-Sammak, MG Simões, J Mintcheva, ... Nature Genetics, 1-11, 2022 | 51 | 2022 |
Resilience Articulation Point (RAP): Cross-layer dependability modeling for nanometer system-on-chip resilience A Herkersdorf, H Aliee, M Engel, M Glaß, C Gimmler-Dumont, J Henkel, ... Microelectronics Reliability 54 (6-7), 1066-1074, 2014 | 43 | 2014 |
Determinants of expression of SARS‐CoV‐2 entry related genes in upper and lower airways H Aliee, F Massip, C Qi, MS de Biase, J van Nijnatten, ETG Kersten, ... Allergy, 2021 | 35* | 2021 |
Fault tree analysis using stochastic logic: A reliable and high speed computing H Aliee, HR Zarandi 2011 Proceedings-Annual Reliability and Maintainability Symposium, 1-6, 2011 | 32 | 2011 |
On the Boolean extension of the Birnbaum importance to non-coherent systems H Aliee, E Borgonovo, M Glaß, J Teich Reliability Engineering & System Safety 160, 191-200, 2017 | 29 | 2017 |
Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development ME Magaletta, M Lobo, EM Kernfeld, H Aliee, JD Huey, TJ Parsons, ... Nature Communications 13 (1), 1-16, 2022 | 28 | 2022 |
Sfaira accelerates data and model reuse in single cell genomics DS Fischer, L Dony, M König, A Moeed, L Zappia, S Tritschler, ... Genome Biology, 2020 | 27 | 2020 |
TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury A Zambusi, KT Novoselc, S Hutten, S Kalpazidou, C Koupourtidou, ... Nature Neuroscience, 1-18, 2022 | 19 | 2022 |
Automatic success tree-based reliability analysis for the consideration of transient and permanent faults H Aliee, M Glaß, F Reimann, J Teich Proceedings of the Conference on Design, Automation and Test in Europe, 1621 …, 2013 | 19 | 2013 |
Current smoking alters gene expression and DNA methylation in the nasal epithelium of patients with asthma KD Reddy, A Lan, IM Boudewijn, SNH Rathnayake, GH Koppelman, ... American Journal of Respiratory Cell and Molecular Biology 65 (4), 366-377, 2021 | 17 | 2021 |
Beyond Predictions in Neural ODEs: Identification and Interventions H Aliee, FJ Theis, N Kilbertus arXiv preprint arXiv:2106.12430, 2021 | 16 | 2021 |
Causal machine learning for single-cell genomics A Tejada-Lapuerta, P Bertin, S Bauer, H Aliee*, Y Bengio*, FJ Theis* arXiv preprint arXiv:2310.14935, 2023 | 9 | 2023 |
Sparsity in Continuous-Depth Neural Networks H Aliee, T Richter, M Solonin, I Ibarra, F Theis, N Kilbertus NeurIPS 2022, 2022 | 9 | 2022 |
An efficient technique for computing importance measures in automatic design of dependable embedded systems H Aliee, M Glaß, F Khosravi, J Teich Proceedings of the 2014 International Conference on Hardware/Software …, 2014 | 8 | 2014 |