An index of substitution saturation and its application X Xia, Z Xie, M Salemi, L Chen, Y Wang Molecular phylogenetics and evolution 26 (1), 1-7, 2003 | 1643 | 2003 |
The phylogenetic handbook: a practical approach to phylogenetic analysis and hypothesis testing P Lemey, M Salemi, AM Vandamme Cambridge University Press, 2009 | 632 | 2009 |
Tracing the origin and history of the HIV-2 epidemic P Lemey, OG Pybus, B Wang, NK Saksena, M Salemi, AM Vandamme Proceedings of the National Academy of Sciences 100 (11), 6588-6592, 2003 | 628 | 2003 |
Ancient co-speciation of simian foamy viruses and primates WM Switzer, M Salemi, V Shanmugam, F Gao, M Cong, C Kuiken, ... Nature 434 (7031), 376-380, 2005 | 303 | 2005 |
Structure of the HIV-1 RNA packaging signal SC Keane, X Heng, K Lu, S Kharytonchyk, V Ramakrishnan, G Carter, ... Science 348 (6237), 917-921, 2015 | 285 | 2015 |
The phylogenetic handbook: a practical approach to DNA and protein phylogeny M Salemi, AM Vandamme Cambridge University Press, 2003 | 229 | 2003 |
The global spread of 2019-nCoV: a molecular evolutionary analysis D Benvenuto, M Giovanetti, M Salemi, M Prosperi, C De Flora, ... Pathogens and global health 114 (2), 64-67, 2020 | 216 | 2020 |
Independent infections of porcine deltacoronavirus among Haitian children JA Lednicky, MS Tagliamonte, SK White, MA Elbadry, MM Alam, ... Nature 600 (7887), 133-137, 2021 | 199 | 2021 |
Dating the common ancestor of SIVcpz and HIV‐1 group M and the origin of HIV‐1 subtypes by using a new method to uncover clock‐like molecular evolution M Salemi, K Strimmer, WW Hall, M Duffy, E Delaporte, S Mboup, ... The FASEB Journal 15 (2), 276-278, 2001 | 198 | 2001 |
US Human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains KE Robbins, P Lemey, OG Pybus, HW Jaffe, AS Youngpairoj, TM Brown, ... Journal of virology 77 (11), 6359-6366, 2003 | 178 | 2003 |
QuRe: software for viral quasispecies reconstruction from next-generation sequencing data MCF Prosperi, M Salemi Bioinformatics 28 (1), 132-133, 2012 | 177 | 2012 |
HIV-1 and HCV sequences from Libyan outbreak T de Oliveira, OG Pybus, A Rambaut, M Salemi, S Cassol, M Ciccozzi, ... Nature 444 (7121), 836-837, 2006 | 170 | 2006 |
Dating the origin of the African human T-cell lymphotropic virus type-i (HTLV-I) subtypes S Van Dooren, M Salemi, AM Vandamme Molecular Biology and Evolution 18 (4), 661-671, 2001 | 168 | 2001 |
Characterization of a Novel Simian Immunodeficiency Virus with a vpu Gene from Greater Spot-Nosed Monkeys (Cercopithecus nictitans) Provides New Insights … V Courgnaud, M Salemi, X Pourrut, E Mpoudi-Ngole, B Abela, P Auzel, ... Journal of virology 76 (16), 8298-8309, 2002 | 166 | 2002 |
The mode and tempo of hepatitis C virus evolution within and among hosts RR Gray, J Parker, P Lemey, M Salemi, A Katzourakis, OG Pybus BMC evolutionary biology 11, 1-10, 2011 | 162 | 2011 |
HIV DNA is frequently present within pathologic tissues evaluated at autopsy from combined antiretroviral therapy-treated patients with undetectable viral loads SL Lamers, R Rose, E Maidji, M Agsalda-Garcia, DJ Nolan, GB Fogel, ... Journal of virology 90 (20), 8968-8983, 2016 | 151 | 2016 |
Zika virus outbreak in Haiti in 2014: molecular and clinical data J Lednicky, VM Beau De Rochars, M El Badry, J Loeb, T Telisma, ... PLoS neglected tropical diseases 10 (4), e0004687, 2016 | 147 | 2016 |
Mayaro virus in child with acute febrile illness, Haiti, 2015 J Lednicky, VMB De Rochars, M Elbadry, J Loeb, T Telisma, ... Emerging infectious diseases 22 (11), 2000, 2016 | 145 | 2016 |
A novel methodology for large-scale phylogeny partition MCF Prosperi, M Ciccozzi, I Fanti, F Saladini, M Pecorari, V Borghi, ... Nature communications 2 (1), 321, 2011 | 139 | 2011 |
The simian origins of the pathogenic human T-cell lymphotropic virus type I AM Vandamme, M Salemi, J Desmyter Trends in microbiology 6 (12), 477-483, 1998 | 126 | 1998 |