| The Genomes of Oryza sativa: A History of Duplications J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, ... PLoS biology 3 (2), e38, 2005 | 1021 | 2005 |
| Topological structure analysis of the protein–protein interaction network in budding yeast D Bu, Y Zhao, L Cai, H Xue, X Zhu, H Lu, J Zhang, S Sun, L Ling, N Zhang, ... Nucleic acids research 31 (9), 2443-2450, 2003 | 956 | 2003 |
| NONCODE: an integrated knowledge database of non-coding RNAs C Liu, B Bai, G Skogerbø, L Cai, W Deng, Y Zhang, D Bu, Y Zhao, R Chen Nucleic acids research 33 (suppl_1), D112-D115, 2005 | 381 | 2005 |
| Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression W Deng, X Zhu, G Skogerbø, Y Zhao, Z Fu, Y Wang, H He, L Cai, H Sun, ... Genome research 16 (1), 20-29, 2006 | 154 | 2006 |
| Protein threading using residue co-variation and deep learning J Zhu, S Wang, D Bu, J Xu Bioinformatics 34 (13), i263-i273, 2018 | 77 | 2018 |
| Fragment‐HMM: A new approach to protein structure prediction SC Li, D Bu, J Xu, M Li Protein Science 17 (11), 1925-1934, 2008 | 75 | 2008 |
| CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction F Ju, J Zhu, B Shao, L Kong, TY Liu, WM Zheng, D Bu Nature communications 12 (1), 2535, 2021 | 68 | 2021 |
| The interactome as a tree—an attempt to visualize the protein–protein interaction network in yeast H Lu, X Zhu, H Liu, G Skogerbø, J Zhang, Y Zhang, L Cai, Y Zhao, S Sun, ... Nucleic acids research 32 (16), 4804-4811, 2004 | 61 | 2004 |
| FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space X Chen, SM He, D Bu, F Zhang, Z Wang, R Chen, W Gao Bioinformatics 24 (18), 1994-2001, 2008 | 49 | 2008 |
| MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control Y Zhao, S He, C Liu, S Ru, H Zhao, Z Yang, P Yang, X Yuan, S Sun, D Bu, ... Trends in Genetics 24 (7), 323-327, 2008 | 47 | 2008 |
| Improving protein fold recognition by extracting fold-specific features from predicted residue–residue contacts J Zhu, H Zhang, SC Li, C Wang, L Kong, S Sun, WM Zheng, D Bu Bioinformatics 33 (23), 3749-3757, 2017 | 46 | 2017 |
| Resilience of human gut microbial communities for the long stay with multiple dietary shifts H Liu, M Han, SC Li, G Tan, S Sun, Z Hu, P Yang, R Wang, Y Liu, F Chen, ... Gut 68 (12), 2254-2255, 2019 | 45 | 2019 |
| FALCON@ home: a high-throughput protein structure prediction server based on remote homologue recognition C Wang, H Zhang, WM Zheng, D Xu, J Zhu, B Wang, K Ning, S Sun, SC Li, ... Bioinformatics 32 (3), 462-464, 2016 | 45 | 2016 |
| Research and implementation of text categorization system based on VSM J Pang, D Bu, S Bai Application Research of Computers 18 (9), 23-26, 2001 | 42 | 2001 |
| Faster and more accurate global protein function assignment from protein interaction networks using the MFGO algorithm S Sun, Y Zhao, Y Jiao, Y Yin, L Cai, Y Zhang, H Lu, R Chen, D Bu FEBS letters 580 (7), 1891-1896, 2006 | 40 | 2006 |
| Principle of granularity in clustering and classification DB Bu, S Bai, GJ Li CHINESE JOURNAL OF COMPUTERS-CHINESE EDITION- 25 (8), 810-816, 2002 | 39 | 2002 |
| DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning H Chen, D Shaw, J Zeng, D Bu, T Jiang Bioinformatics 35 (14), i284-i294, 2019 | 38 | 2019 |
| Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra S Sun, C Yu, Y Qiao, Y Lin, G Dong, C Liu, J Zhang, Z Zhang, J Cai, ... Journal of proteome research 7 (01), 202-208, 2008 | 37 | 2008 |
| Date of origin of the SARS coronavirus strains H Lu, Y Zhao, J Zhang, Y Wang, W Li, X Zhu, S Sun, J Xu, L Ling, L Cai, ... BMC Infectious Diseases 4, 1-6, 2004 | 34 | 2004 |
| Research and implementation of text categorization system based on VSM P Jianfeng, B Dongbo, B Shuo Application Research of Computers 18 (9), 23-26, 2001 | 32 | 2001 |
