| A long noncoding RNA lincRNA-EPS acts as a transcriptional brake to restrain inflammation MK Atianand, W Hu, AT Satpathy, Y Shen, EP Ricci, ... Cell 165 (7), 1672-1685, 2016 | 442 | 2016 |
| Transcript-RNA-templated DNA recombination and repair H Keskin, Y Shen, F Huang, M Patel, T Yang, K Ashley, AV Mazin, ... Nature 515 (7527), 436-439, 2014 | 380 | 2014 |
| irCLIP platform for efficient characterization of protein–RNA interactions BJ Zarnegar, RA Flynn, Y Shen, BT Do, HY Chang, PA Khavari Nature methods 13 (6), 489-492, 2016 | 258 | 2016 |
| An inducible long noncoding RNA amplifies DNA damage signaling AM Schmitt, JT Garcia, T Hung, RA Flynn, Y Shen, K Qu, AY Payumo, ... Nature genetics 48 (11), 1370-1376, 2016 | 244 | 2016 |
| ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing X Chen, Y Shen, W Draper, JD Buenrostro, U Litzenburger, SW Cho, ... Nature methods 13 (12), 1013-1020, 2016 | 238 | 2016 |
| PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples C Hong, S Manimaran, Y Shen, JF Perez-Rogers, AL Byrd, ... Microbiome 2, 1-15, 2014 | 217 | 2014 |
| Leukemia-associated cohesin mutants dominantly enforce stem cell programs and impair human hematopoietic progenitor differentiation C Mazumdar, Y Shen, S Xavy, F Zhao, A Reinisch, R Li, MR Corces, ... Cell stem cell 17 (6), 675-688, 2015 | 209 | 2015 |
| Single-cell epigenomic variability reveals functional cancer heterogeneity UM Litzenburger, JD Buenrostro, B Wu, Y Shen, NC Sheffield, A Kathiria, ... Genome biology 18, 1-12, 2017 | 113 | 2017 |
| RNA-driven genetic changes in bacteria and in human cells Y Shen, P Nandi, MB Taylor, S Stuckey, HP Bhadsavle, B Weiss, F Storici Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 717 (1 …, 2011 | 79 | 2011 |
| Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities E Castro-Nallar, Y Shen, RJ Freishtat, M Pérez-Losada, S Manimaran, ... BMC medical genomics 8, 1-9, 2015 | 74 | 2015 |
| Hnrnph1 Is A Quantitative Trait Gene for Methamphetamine Sensitivity N Yazdani, CC Parker, Y Shen, ER Reed, MA Guido, LA Kole, ... PLoS genetics 11 (12), e1005713, 2015 | 63 | 2015 |
| Mispaired rNMPs in DNA are mutagenic and are targets of mismatch repair and RNases H Y Shen, KD Koh, B Weiss, F Storici Nature structural & molecular biology 19 (1), 98-104, 2012 | 59 | 2012 |
| ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways Y Shen, M Rahman, SR Piccolo, D Gusenleitner, NN El-Chaar, L Cheng, ... Bioinformatics 31 (11), 1745-1753, 2015 | 42 | 2015 |
| Integrating metagenomics and host gene expression to characterize asthma-associated microbial communities E Castro-Nallar, Y Shen, RJ Freishtat, M Pérez-Losada, S Manimaran, ... BMC Medical Genomics 8 (50), 26277095, 2015 | 9 | 2015 |
| Detection of RNA-templated double-strand break repair in yeast Y Shen, F Storici DNA Recombination: Methods and Protocols, 193-204, 2011 | 7 | 2011 |
| Generation of RNA/DNA Hybrids in Genomic DNA by Transformation using RNA-containing Oligonucleotides Y Shen, F Storici JoVE (Journal of Visualized Experiments), e2152, 2010 | 6 | 2010 |
| Striatal transcriptome analysis of a congenic mouse line (chromosome 11: 50–60Mb) exhibiting reduced methamphetamine sensitivity N Yazdani, Y Shen, WE Johnson, CD Bryant Genomics data 8, 77-80, 2016 | 5 | 2016 |
| 397 Uncovering causative, noncoding genetic variants in cutaneous diseases G Wozniak, Y Shen, A Rubin, P Neela, P Khavari Journal of Investigative Dermatology 139 (5), S68, 2019 | | 2019 |
| PathoScope: a multi-omic approach to characterize microbiomes and identify pathogens E Castro-Nallar, Y Shen, RJ Freishtat, M Pérez-Losada, S Manimaran, ... | | |
