Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome Z Peng, Y Cheng, BCM Tan, L Kang, Z Tian, Y Zhu, W Zhang, Y Liang, ... Nature biotechnology 30 (3), 253-260, 2012 | 588 | 2012 |
The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 421 | 2020 |
MYB-QKI rearrangements in angiocentric glioma drive tumorigenicity through a tripartite mechanism P Bandopadhayay, LA Ramkissoon, P Jain, G Bergthold, J Wala, R Zeid, ... Nature genetics 48 (3), 273-282, 2016 | 286 | 2016 |
Integrated proteogenomic characterization across major histological types of pediatric brain cancer F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ... Cell 183 (7), 1962-1985. e31, 2020 | 234 | 2020 |
A pilot precision medicine trial for children with diffuse intrinsic pontine glioma—PNOC003: A report from the Pacific Pediatric Neuro‐Oncology Consortium S Mueller, P Jain, WS Liang, L Kilburn, C Kline, N Gupta, E Panditharatna, ... International journal of cancer 145 (7), 1889-1901, 2019 | 112 | 2019 |
Overcoming resistance to single-agent therapy for oncogenic BRAF gene fusions via combinatorial targeting of MAPK and PI3K/mTOR signaling pathways P Jain, A Silva, HJ Han, SS Lang, Y Zhu, K Boucher, TE Smith, A Vakil, ... Oncotarget 8 (49), 84697, 2017 | 47 | 2017 |
Intratumoral genetic and functional heterogeneity in pediatric glioblastoma M Hoffman, AH Gillmor, DJ Kunz, MJ Johnston, A Nikolic, K Narta, ... Cancer research 79 (9), 2111-2123, 2019 | 45 | 2019 |
The children's brain tumor network (CBTN)-Accelerating research in pediatric central nervous system tumors through collaboration and open science JV Lilly, JL Rokita, JL Mason, T Patton, S Stefankiewiz, D Higgins, ... Neoplasia 35, 100846, 2023 | 38 | 2023 |
Transcriptome signatures associated with meningioma progression AN Viaene, B Zhang, M Martinez-Lage, C Xiang, U Tosi, JP Thawani, ... Acta neuropathologica communications 7, 1-13, 2019 | 36 | 2019 |
Pediatric high-grade glioma resources from the Children’s Brain Tumor Tissue Consortium H Ijaz, M Koptyra, KS Gaonkar, JL Rokita, VP Baubet, L Tauhid, Y Zhu, ... Neuro-oncology 22 (1), 163-165, 2020 | 35 | 2020 |
OpenPBTA: The Open Pediatric Brain Tumor Atlas JA Shapiro, KS Gaonkar, SJ Spielman, CL Savonen, CJ Bethell, R Jin, ... Cell genomics 3 (7), 2023 | 28* | 2023 |
Association of a functional Claudin-5 variant with schizophrenia in female patients with the 22q11. 2 deletion syndrome Y Guo, LN Singh, Y Zhu, RE Gur, A Resnick, SA Anderson, JI Alvarez Schizophrenia research 215, 451, 2020 | 17 | 2020 |
MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data LN Singh, B Ennis, B Loneragan, NL Tsao, MIG Lopez Sanchez, J Li, ... PLoS Computational Biology 17 (11), e1009594, 2021 | 15 | 2021 |
Children’s Brain Tumor Network; Clinical Proteomic Tumor Analysis Consortium. Integrated proteogenomic characterization across major histological types of pediatric brain cancer F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ... Cell 183 (7), 1962-1985, 2020 | 11 | 2020 |
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions KS Gaonkar, F Marini, KS Rathi, P Jain, Y Zhu, NA Chimicles, MA Brown, ... BMC bioinformatics 21, 1-21, 2020 | 9 | 2020 |
Gabriella Miller Kids First Data Resource Center: Harmonizing clinical and genomic data to support childhood cancer and structural birth defect research AP Heath, DM Taylor, Y Zhu, P Raman, J Lilly, P Storm, AJ Waanders, ... Cancer Research 79 (13_Supplement), 2464-2464, 2019 | 8 | 2019 |
Transcriptional immunogenomic analysis reveals distinct immunological clusters in paediatric nervous system tumours A Nabbi, P Beck, A Delaidelli, DA Oldridge, S Sudhaman, K Zhu, ... Genome medicine 15 (1), 67, 2023 | 6 | 2023 |
Pediatric high grade glioma resources from the children’s brain tumor tissue consortium (CBTTC) and pediatric brain tumor atlas (PBTA) H Ijaz, M Koptyra, KS Gaonkar, JL Rokita, VP Baubet, L Tauhid, Y Zhu, ... bioRxiv, 656587, 2019 | 6 | 2019 |
Ancestry and frequency of genetic variants in the general population are confounders in the characterization of germline variants linked to cancer A Bobyn, M Zarrei, Y Zhu, M Hoffman, D Brenner, AC Resnick, ... BMC Medical Genetics 21, 1-10, 2020 | 4 | 2020 |
gene-15. Cavatica-a pediatric genomic cloud empowering data discovery through the pediatric brain tumor atlas P Raman, AJ Waanders, PB Storm, JV Lilly, J Mason, AP Heath, ... Neuro-Oncology 19 (suppl_4), iv21-iv21, 2017 | 4 | 2017 |