| Large-scale assessment of binding free energy calculations in active drug discovery projects CEM Schindler, H Baumann, A Blum, D Böse, HP Buchstaller, ... Journal of Chemical Information and Modeling 60 (11), 5457-5474, 2020 | 206 | 2020 |
| Fully blind peptide-protein docking with pepATTRACT CEM Schindler, SJ de Vries, M Zacharias Structure 23 (8), 1507-1515, 2015 | 113 | 2015 |
| The pepATTRACT web server for blind, large-scale peptide–protein docking SJ de Vries, J Rey, CEM Schindler, M Zacharias, P Tuffery Nucleic Acids Research 45 (W1), W361-W364, 2017 | 103 | 2017 |
| A web interface for easy flexible protein-protein docking with ATTRACT SJ de Vries, CEM Schindler, IC de Beauchêne, M Zacharias Biophysical journal 108 (3), 462-465, 2015 | 97 | 2015 |
| iATTRACT: Simultaneous global and local interface optimization for protein–protein docking refinement CEM Schindler, SJ de Vries, M Zacharias Proteins: Structure, Function, and Bioinformatics 83 (2), 248-258, 2015 | 63 | 2015 |
| Chauvot de Beauchene I, Zacharias M. A web interface for easy flexible protein-protein docking with ATTRACT SJ De Vries, CEM Schindler Biophys. J 108 (3), 462-465, 2015 | 60 | 2015 |
| Best practices for constructing, preparing, and evaluating protein-ligand binding affinity benchmarks [article v1. 0] DF Hahn, CI Bayly, ML Boby, HEB Macdonald, JD Chodera, V Gapsys, ... Living journal of computational molecular science 4 (1), 2022 | 53 | 2022 |
| SAXS data alone can generate high-quality models of protein-protein complexes CEM Schindler, SJ de Vries, A Sasse, M Zacharias Structure 24 (8), 1387-1397, 2016 | 52 | 2016 |
| Concerted regulation of ISWI by an autoinhibitory domain and the H4 N-terminal tail J Ludwigsen, S Pfennig, AK Singh, C Schindler, N Harrer, I Forne, ... Elife 6, e21477, 2017 | 35 | 2017 |
| Mechanism of function of viral channel proteins and implications for drug development WB Fischer, YT Wang, C Schindler, CP Chen International review of cell and molecular biology 294, 259-321, 2012 | 35 | 2012 |
| Protein‐protein and peptide‐protein docking and refinement using ATTRACT in CAPRI CEM Schindler, I Chauvot de Beauchêne, SJ de Vries, M Zacharias Proteins: Structure, Function, and Bioinformatics 85 (3), 391-398, 2017 | 34* | 2017 |
| Application of enhanced sampling Monte Carlo methods for high-resolution protein-protein docking in Rosetta Z Zhang, CEM Schindler, OF Lange, M Zacharias PLoS One 10 (6), e0125941, 2015 | 31 | 2015 |
| Structural architecture of the nucleosome remodeler ISWI determined from cross-linking, mass spectrometry, SAXS, and modeling N Harrer, CEM Schindler, LK Bruetzel, I Forne, J Ludwigsen, A Imhof, ... Structure 26 (2), 282-294. e6, 2018 | 20 | 2018 |
| Cryo-EM data are superior to contact and interface information in integrative modeling SJ de Vries, IC de Beauchêne, CEM Schindler, M Zacharias Biophysical journal 110 (4), 785-797, 2016 | 20 | 2016 |
| Relative binding affinity prediction of farnesoid X receptor in the D3R Grand Challenge 2 using FEP+ C Schindler, F Rippmann, D Kuhn Journal of computer-aided molecular design 32, 265-272, 2018 | 17 | 2018 |
| Rapid design of knowledge-based scoring potentials for enrichment of near-native geometries in protein-protein docking A Sasse, SJ de Vries, CEM Schindler, IC de Beauchêne, M Zacharias PloS one 12 (1), e0170625, 2017 | 15 | 2017 |
| Free energy calculations elucidate substrate binding, gating mechanism, and tolerance‐promoting mutations in herbicide target 4‐hydroxyphenylpyruvate dioxygenase CEM Schindler, E Hollenbach, T Mietzner, KJ Schleifer, M Zacharias Protein Science 28 (6), 1048-1058, 2019 | 13 | 2019 |
| Collaborative assessment of molecular geometries and energies from the Open Force Field L D’Amore, DF Hahn, DL Dotson, JT Horton, J Anwar, I Craig, T Fox, ... Journal of chemical information and modeling 62 (23), 6094-6104, 2022 | 12 | 2022 |
| Structure based computational assessment of channel properties of assembled ORF‐8a from SARS‐CoV HJ Hsu, MH Lin, C Schindler, WB Fischer Proteins: Structure, Function, and Bioinformatics 83 (2), 300-308, 2015 | 9 | 2015 |
| Sequence alignment of viral channel proteins with cellular ion channels C Schindler, WB Fischer Journal of Computational Biology 19 (9), 1060-1072, 2012 | 5 | 2012 |
