Widespread long-range cis-regulatory elements in the maize genome WA Ricci, Z Lu, L Ji, AP Marand, CL Ethridge, NG Murphy, JM Noshay, ... Nature plants 5 (12), 1237-1249, 2019 | 273 | 2019 |
The maize W22 genome provides a foundation for functional genomics and transposon biology NM Springer, SN Anderson, CM Andorf, KR Ahern, F Bai, O Barad, ... Nature genetics 50 (9), 1282-1288, 2018 | 197 | 2018 |
Natural variation for gene expression responses to abiotic stress in maize AJ Waters, I Makarevitch, J Noshay, LT Burghardt, CN Hirsch, CD Hirsch, ... The Plant Journal 89 (4), 706-717, 2017 | 114 | 2017 |
Transposable elements contribute to dynamic genome content in maize SN Anderson, MC Stitzer, AB Brohammer, P Zhou, JM Noshay, ... The Plant Journal 100 (5), 1052-1065, 2019 | 100 | 2019 |
Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes PA Crisp, AP Marand, JM Noshay, P Zhou, Z Lu, RJ Schmitz, NM Springer Proceedings of the National Academy of Sciences 117 (38), 23991-24000, 2020 | 69 | 2020 |
Monitoring the interplay between transposable element families and DNA methylation in maize JM Noshay, SN Anderson, P Zhou, L Ji, W Ricci, Z Lu, MC Stitzer, ... PLoS genetics 15 (9), e1008291, 2019 | 59 | 2019 |
Meta gene regulatory networks in maize highlight functionally relevant regulatory interactions P Zhou, Z Li, E Magnusson, F Gomez Cano, PA Crisp, JM Noshay, ... The Plant Cell 32 (5), 1377-1396, 2020 | 50 | 2020 |
Identification of the expressome by machine learning on omics data RC Sartor, J Noshay, NM Springer, SP Briggs Proceedings of the National Academy of Sciences 116 (36), 18119-18125, 2019 | 49 | 2019 |
Prediction of conserved and variable heat and cold stress response in maize using cis-regulatory information P Zhou, TA Enders, ZA Myers, E Magnusson, PA Crisp, JM Noshay, ... The Plant Cell 34 (1), 514-534, 2022 | 36 | 2022 |
Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize Z Liang, SN Anderson, JM Noshay, PA Crisp, TA Enders, NM Springer Plant physiology 186 (1), 420-433, 2021 | 24 | 2021 |
Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons JM Noshay, AP Marand, SN Anderson, P Zhou, MK Mejia Guerra, Z Lu, ... Genetics 217 (1), 1-13, 2021 | 22 | 2021 |
Whole-genome variation of transposable element insertions in a maize diversity panel Y Qiu, CH O’Connor, R Della Coletta, JS Renk, PJ Monnahan, JM Noshay, ... G3 11 (10), jkab238, 2021 | 20 | 2021 |
Stories that can’t be told by SNPs; DNA methylation variation in plant populations JM Noshay, NM Springer Current Opinion in Plant Biology 61, 101989, 2021 | 19 | 2021 |
Population level variation of transposable elements in a maize diversity panel CH O’Connor, Y Qiu, R Della Coletta, P Monnahan, J Noshay, A Gilbert, ... Scanning Electron Microsc Meet at, 2020 | 10 | 2020 |
Hybrid decay: a transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize W Xue, SN Anderson, X Wang, L Yang, PA Crisp, Q Li, J Noshay, ... Genetics 213 (1), 143-160, 2019 | 10 | 2019 |
Opportunities to use DNA methylation to distil functional elements in large crop genomes PA Crisp, JM Noshay, SN Anderson, NM Springer Molecular Plant 12 (3), 282-284, 2019 | 10 | 2019 |
Cis-regulatory elements within TEs can influence expression of nearby maize genes JM Noshay, AP Marand, SN Anderson, P Zhou, MKM Guerra, Z Lu, ... BioRxiv, 2020.05. 20.107169, 2020 | 9 | 2020 |
The maize methylome JM Noshay, PA Crisp, NM Springer The Maize Genome, 81-96, 2018 | 7 | 2018 |
Applying cis-regulatory codes to predict conserved and variable heat and cold stress response in maize P Zhou, TA Enders, ZA Myers, E Magnusson, PA Crisp, J Noshay, ... bioRxiv, 2021.01. 15.426829, 2021 | 5 | 2021 |
Genetic and epigenetic contributions to variation in transposable element expression responses to abiotic stress in maize Z Liang, SN Anderson, JM Noshay, PA Crisp, TA Enders, NM Springer bioRxiv, 2020.08. 26.268102, 2020 | 5 | 2020 |