Can correct protein models be identified? B Wallner, A Elofsson Protein science 12 (5), 1073-1086, 2003 | 818 | 2003 |
All are not equal: a benchmark of different homology modeling programs B Wallner, A Elofsson Protein science 14 (5), 1315-1327, 2005 | 284 | 2005 |
DockQ: a quality measure for protein-protein docking models S Basu, B Wallner PloS one 11 (8), e0161879, 2016 | 260 | 2016 |
Identification of correct regions in protein models using structural, alignment, and consensus information B Wallner, A Elofsson Protein Science 15 (4), 900-913, 2006 | 232 | 2006 |
Critical assessment of protein intrinsic disorder prediction DPCSCET Marco Necci, Damiano Piovesan, CAID Predictors Nature Methods 18, 472-481, 2021 | 219 | 2021 |
Improved model quality assessment using ProQ2 A Ray, E Lindahl, B Wallner BMC bioinformatics 13, 1-12, 2012 | 211 | 2012 |
Using multiple templates to improve quality of homology models in automated homology modeling P Larsson, B Wallner, E Lindahl, A Elofsson Protein Science 17 (6), 990-1002, 2008 | 188 | 2008 |
Prediction of membrane protein structures with complex topologies using limited constraints P Barth, B Wallner, D Baker Proceedings of the National Academy of Sciences 106 (5), 1409-1414, 2009 | 180 | 2009 |
ProQ3D: improved model quality assessments using deep learning K Uziela, D Menéndez Hurtado, N Shu, B Wallner, A Elofsson Bioinformatics 33 (10), 1578-1580, 2017 | 174 | 2017 |
Automatic consensus‐based fold recognition using Pcons, ProQ, and Pmodeller B Wallner, H Fang, A Elofsson Proteins: Structure, Function, and Bioinformatics 53 (S6), 534-541, 2003 | 156 | 2003 |
Tracking a complete voltage-sensor cycle with metal-ion bridges U Henrion, J Renhorn, SI Börjesson, EM Nelson, CS Schwaiger, ... Proceedings of the National Academy of Sciences 109 (22), 8552-8557, 2012 | 146 | 2012 |
Myc and its interactors take shape WB Tu, S Helander, R Pilstål, KA Hickman, C Lourenco, I Jurisica, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1849 (5), 469-483, 2015 | 142 | 2015 |
Profile–profile methods provide improved fold‐recognition: A study of different profile–profile alignment methods T Ohlson, B Wallner, A Elofsson Proteins: Structure, Function, and Bioinformatics 57 (1), 188-197, 2004 | 128 | 2004 |
Pcons5: combining consensus, structural evaluation and fold recognition scores B Wallner, A Elofsson Bioinformatics 21 (23), 4248-4254, 2005 | 123 | 2005 |
Prediction of global and local model quality in CASP7 using Pcons and ProQ B Wallner, A Elofsson Proteins: Structure, Function, and Bioinformatics 69 (S8), 184-193, 2007 | 114 | 2007 |
ProQ3: Improved model quality assessments using Rosetta energy terms K Uziela, N Shu, B Wallner, A Elofsson Scientific reports 6 (1), 33509, 2016 | 107 | 2016 |
Estimation of model accuracy in CASP13 J Cheng, MH Choe, A Elofsson, KS Han, J Hou, AHA Maghrabi, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1361-1377, 2019 | 93 | 2019 |
Improving peptide-protein docking with AlphaFold-Multimer using forced sampling I Johansson-Åkhe, B Wallner Frontiers in bioinformatics 2, 959160, 2022 | 85 | 2022 |
Microsecond simulations indicate that ethanol binds between subunits and could stabilize an open-state model of a glycine receptor S Murail, B Wallner, JR Trudell, E Bertaccini, E Lindahl Biophysical journal 100 (7), 1642-1650, 2011 | 83 | 2011 |
Model quality assessment for membrane proteins A Ray, E Lindahl, B Wallner Bioinformatics 26 (24), 3067-3074, 2010 | 82 | 2010 |