Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances CH Tseng, PW Chiang, FK Shiah, YL Chen, JR Liou, TC Hsu, ... The ISME journal 7 (12), 2374-2386, 2013 | 88 | 2013 |
Unsupervised discovery of microbial population structure within metagenomes using nucleotide base composition I Saeed, SL Tang, SK Halgamuge Nucleic acids research 40 (5), e34-e34, 2012 | 72 | 2012 |
ViQuaS: an improved reconstruction pipeline for viral quasispecies spectra generated by next-generation sequencing D Jayasundara, I Saeed, S Maheswararajah, BC Chang, SL Tang, ... Bioinformatics 31 (6), 886-896, 2015 | 62 | 2015 |
EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data CD Wijetunge, I Saeed, BA Boughton, JM Spraggins, RM Caprioli, ... Bioinformatics 31 (19), 3198-3206, 2015 | 42 | 2015 |
Prokaryotic assemblages and metagenomes in pelagic zones of the South China Sea CH Tseng, PW Chiang, HC Lai, FK Shiah, TC Hsu, YL Chen, LS Wen, ... BMC genomics 16, 1-16, 2015 | 41 | 2015 |
The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments I Saeed, SK Halgamuge BMC genomics 10, 1-13, 2009 | 22 | 2009 |
Bioinformatics pipelines for targeted resequencing and whole-exome sequencing of human and mouse genomes: a virtual appliance approach for instant deployment J Li, MA Doyle, I Saeed, SQ Wong, V Mar, DL Goode, F Caramia, K Doig, ... PloS one 9 (4), e95217, 2014 | 19 | 2014 |
Using the active appearance model to detect driver fatigue I Saeed, A Wang, R Senaratne, S Halgamuge 2007 Third International Conference on Information and Automation for …, 2007 | 19 | 2007 |
Exploratory analysis of high-throughput metabolomic data CD Wijetunge, Z Li, I Saeed, J Bowne, AL Hsu, U Roessner, A Bacic, ... Metabolomics 9, 1311-1320, 2013 | 16 | 2013 |
A new peak detection algorithm for MALDI mass spectrometry data based on a modified Asymmetric Pseudo-Voigt model CD Wijetunge, I Saeed, BA Boughton, U Roessner, SK Halgamuge BMC genomics 16, 1-12, 2015 | 15 | 2015 |
Comprehensive insights into composition, metabolic potentials, and interactions among archaeal, bacterial, and viral assemblages in meromictic Lake Shunet in Siberia YT Wu, CY Yang, PW Chiang, CH Tseng, HH Chiu, I Saeed, B Baatar, ... Frontiers in microbiology 9, 1763, 2018 | 14 | 2018 |
Assessing species diversity using Metavirome data: methods and challenges D Herath, D Jayasundara, D Ackland, I Saeed, SL Tang, S Halgamuge Computational and structural biotechnology journal 15, 447-455, 2017 | 14 | 2017 |
Dynamic self-organising maps: theory, methods and applications AL Hsu, I Saeed, SK Halgamuge Foundations of Computational, Intelligence Volume 1: Learning and …, 2009 | 14 | 2009 |
Unsupervised learning for exploring MALDI imaging mass spectrometry ‘omics’ data CD Wijetunge, I Saeed, SK Halgamuge, B Boughton, U Roessner 7th International Conference on Information and Automation for …, 2014 | 8 | 2014 |
Accurate reconstruction of viral quasispecies spectra through improved estimation of strain richness D Jayasundara, I Saeed, BC Chang, SL Tang, SK Halgamuge BMC bioinformatics 16, 1-12, 2015 | 7 | 2015 |
Comprehensive insights into composition, metabolic potentials, and interactions among archaeal, bacterial, and viral assemblages in meromictic Lake Shunet in Siberia. Front … YT Wu, CY Yang, PW Chiang, CH Tseng, HH Chiu, I Saeed, A Baatar, ... | 5 | 2018 |
ENVirT: inference of ecological characteristics of viruses from metagenomic data D Jayasundara, D Herath, D Senanayake, I Saeed, CY Yang, Y Sun, ... BMC bioinformatics 19, 1-12, 2019 | 4 | 2019 |
Accurate reconstruction of viral quasispecies spectra through improved estimation of strain richness S Halgamuge, D Jayasundara, I Saeed, BC Chang, SL Tang BioMed Central, 2015 | | 2015 |
Nucleotide Composition Analysis: Use in Metagenome Analysis I Saeed Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes: Basics …, 2015 | | 2015 |
Microbial community and metabolic function in a meromictic lake in Siberia YT Wu, CY Yang, CH Tseng, I Saeed, B Baatar, DY Rogozin, ... | | 2014 |