Differential retention and divergent resolution of duplicate genes following whole-genome duplication CL McGrath, JF Gout, P Johri, TG Doak, M Lynch Genome research 24 (10), 1665-1675, 2014 | 128 | 2014 |
Toward an evolutionarily appropriate null model: jointly inferring demography and purifying selection P Johri, B Charlesworth, JD Jensen Genetics 215 (1), 173-192, 2020 | 114 | 2020 |
The impact of purifying and background selection on the inference of population history: problems and prospects P Johri, K Riall, H Becher, L Excoffier, B Charlesworth, JD Jensen Molecular Biology and Evolution 38 (7), 2986–3003, 2021 | 77 | 2021 |
Recommendations for improving statistical inference in population genomics P Johri, CF Aquadro, M Beaumont, B Charlesworth, L Excoffier, ... PLoS biology 20 (5), e3001669, 2022 | 72 | 2022 |
Estimating seven coefficients of pairwise relatedness using population-genomic data MS Ackerman, P Johri, K Spitze, S Xu, TG Doak, K Young, M Lynch Genetics 206 (1), 105-118, 2017 | 44 | 2017 |
On the prospect of achieving accurate joint estimation of selection with population history P Johri, A Eyre-Walker, RN Gutenkunst, KE Lohmueller, JD Jensen Genome biology and evolution 14 (7), evac088, 2022 | 29 | 2022 |
Population Genomics of Paramecium Species P Johri, S Krenek, GK Marinov, TG Doak, TU Berendonk, M Lynch Molecular Biology and Evolution 34 (5), 1194-1216, 2017 | 28 | 2017 |
Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the Cryptic Paramecium Complex JF Gout, Y Hao, P Johri, O Arnaiz, TG Doak, S Bhullar, A Couloux, ... Molecular biology and evolution 40 (5), msad107, 2023 | 27* | 2023 |
Population Genetics of Paramecium Mitochondrial Genomes: Recombination, Mutation Spectrum, and Efficacy of Selection P Johri, GK Marinov, TG Doak, M Lynch Genome biology and evolution 11 (5), 1398-1416, 2019 | 25 | 2019 |
Soft selective sweeps: addressing new definitions, evaluating competing models, and interpreting empirical outliers P Johri, W Stephan, JD Jensen PLoS genetics 18 (2), e1010022, 2022 | 14 | 2022 |
Revisiting the notion of deleterious sweeps P Johri, B Charlesworth, EK Howell, M Lynch, JD Jensen Genetics 219 (3), iyab094, 2021 | 14 | 2021 |
A population-genetic lens into the process of gene loss following whole-genome duplication P Johri, JF Gout, TG Doak, M Lynch Molecular biology and evolution 39 (6), msac118, 2022 | 11 | 2022 |
Developing an evolutionary baseline model for humans: jointly inferring purifying selection with population history P Johri, SP Pfeifer, JD Jensen Molecular biology and evolution 40 (5), msad100, 2023 | 8 | 2023 |
Developing an appropriate evolutionary baseline model for the study of SARS-CoV-2 patient samples JW Terbot, P Johri, SW Liphardt, V Soni, SP Pfeifer, BS Cooper, JM Good, ... PLoS Pathogens 19 (4), e1011265, 2023 | 7 | 2023 |
Evaluating power to detect recurrent selective sweeps under increasingly realistic evolutionary null models V Soni, P Johri, JD Jensen Evolution 77 (10), 2113-2127, 2023 | 6 | 2023 |
Developing an appropriate evolutionary baseline model for the study of human cytomegalovirus AA Howell, JW Terbot, V Soni, P Johri, JD Jensen, SP Pfeifer Genome biology and evolution 15 (4), evad059, 2023 | 5 | 2023 |
Inferring the distribution of fitness effects in patient-sampled and experimental virus populations: two case studies AY Morales-Arce, P Johri, JD Jensen Heredity 128 (2), 79-87, 2022 | 3 | 2022 |
Paramecium Genetics, Genomics, and Evolution H Long, P Johri, JF Gout, J Ni, Y Hao, T Licknack, Y Wang, J Pan, ... Annual review of genetics 57 (1), 391-410, 2023 | 1 | 2023 |
Biases in ARG-based inference of historical population size in populations experiencing selection JI Marsh, P Johri Molecular Biology and Evolution 41 (7), 2024 | | 2024 |
Hill-Robertson interference may bias the inference of fitness effects of new mutations in highly selfing species A Daigle, P Johri bioRxiv, 2024.02. 06.579142, 2024 | | 2024 |