| Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates J Damas, GM Hughes, KC Keough, CA Painter, NS Persky, M Corbo, ... Proceedings of the National Academy of Sciences 117 (36), 22311-22322, 2020 | 522 | 2020 |
| Progressive Cactus is a multiple-genome aligner for the thousand-genome era J Armstrong, G Hickey, M Diekhans, IT Fiddes, AM Novak, A Deran, ... Nature 587 (7833), 246-251, 2020 | 182 | 2020 |
| A comparative genomics multitool for scientific discovery and conservation Nature 587 (7833), 240-245, 2020 | 161 | 2020 |
| Errors in the bisulfite conversion of DNA: modulating inappropriate-and failed-conversion frequencies DP Genereux, WC Johnson, AF Burden, R Stöger, CD Laird Nucleic acids research 36 (22), e150-e150, 2008 | 154 | 2008 |
| Transient exposure to low levels of insecticide affects metabolic networks of honeybee larvae K Derecka, MJ Blythe, S Malla, DP Genereux, A Guffanti, P Pavan, ... PloS one 8 (7), e68191, 2013 | 144 | 2013 |
| A population-epigenetic model to infer site-specific methylation rates from double-stranded DNA methylation patterns DP Genereux, BE Miner, CT Bergstrom, CD Laird Proceedings of the National Academy of Sciences 102 (16), 5802-5807, 2005 | 101 | 2005 |
| Much ado about bacteria-to-vertebrate lateral gene transfer DP Genereux, JM Logsdon TRENDS in Genetics 19 (4), 191-195, 2003 | 61 | 2003 |
| Integrating evolutionary and regulatory information with a multispecies approach implicates genes and pathways in obsessive-compulsive disorder HJ Noh, R Tang, J Flannick, C O’Dushlaine, R Swofford, D Howrigan, ... Nature communications 8 (1), 774, 2017 | 58 | 2017 |
| Ancestry-inclusive dog genomics challenges popular breed stereotypes K Morrill, J Hekman, X Li, J McClure, B Logan, L Goodman, M Gao, ... Science 376 (6592), eabk0639, 2022 | 56 | 2022 |
| Testing the FMR1 promoter for mosaicism in DNA methylation among CpG sites, strands, and cells in FMR1-expressing males with fragile X syndrome R Stöger, DP Genereux, RJ Hagerman, PJ Hagerman, F Tassone, ... PLoS One 6 (8), e23648, 2011 | 38 | 2011 |
| Statistical inference of transmission fidelity of DNA methylation patterns over somatic cell divisions in mammals AQ Fu, DP Genereux, R Stöger, CD Laird, M Stephens The annals of applied statistics 4 (2), 871, 2010 | 32 | 2010 |
| Analysis of the human mucosal response to cholera reveals sustained activation of innate immune signaling pathways DL Bourque, TR Bhuiyan, DP Genereux, R Rashu, CN Ellis, F Chowdhury, ... Infection and immunity 86 (2), 10.1128/iai. 00594-17, 2018 | 27 | 2018 |
| Combining citizen science and genomics to investigate tick, pathogen, and commensal microbiome at single-tick resolution G Chauhan, J McClure, J Hekman, PW Marsh, JA Bailey, RF Daniels, ... Frontiers in genetics 10, 1322, 2020 | 25 | 2020 |
| Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era J Armstrong, G Hickey, M Diekhans, A Deran, Q Fang, D Xie, S Feng, ... BioRxiv, 730531, 2019 | 25 | 2019 |
| BarkBase: epigenomic annotation of canine genomes K Megquier, DP Genereux, J Hekman, R Swofford, J Turner-Maier, ... Genes 10 (6), 433, 2019 | 25 | 2019 |
| Evolutionary constraint and innovation across hundreds of placental mammals MJ Christmas, IM Kaplow, DP Genereux, MX Dong, GM Hughes, X Li, ... Science 380 (6643), eabn3943, 2023 | 20 | 2023 |
| Statistical inference of in vivo properties of human DNA methyltransferases from double-stranded methylation patterns AQ Fu, DP Genereux, R Stöger, AF Burden, CD Laird, M Stephens PLoS One 7 (3), e32225, 2012 | 20 | 2012 |
| Epigenetic memory via concordant DNA methylation is inversely correlated to developmental potential of mammalian cells M Choi, DP Genereux, J Goodson, H Al-Azzawi, SQ Allain, N Simon, ... PLoS genetics 13 (11), e1007060, 2017 | 19 | 2017 |
| Evolution in action: understanding antibiotic resistance DP Genereux, CT Bergstrom Evolutionary science and society: educating a new generation. AIBS/BCSC …, 2005 | 19 | 2005 |
| A genomic timescale for placental mammal evolution NM Foley, VC Mason, AJ Harris, KR Bredemeyer, J Damas, HA Lewin, ... Science 380 (6643), eabl8189, 2023 | 17 | 2023 |
