Data and representation for Turkish natural language inference E Budur, R Özçelik, T Güngör, C Potts arXiv preprint arXiv:2004.14963, 2020 | 31 | 2020 |
Chemboost: A chemical language based approach for protein–ligand binding affinity prediction R Özçelik, H Öztürk, A Özgür, E Ozkirimli Molecular Informatics 40 (5), 2000212, 2021 | 30* | 2021 |
Structure‐Based Drug Discovery with Deep Learning R Özçelik, D van Tilborg, J Jiménez‐Luna, F Grisoni ChemBioChem 24 (13), e202200776, 2023 | 21 | 2023 |
Vapur: A Search Engine to Find Related Protein--Compound Pairs in COVID-19 Literature A Köksal, H Dönmez, R Özçelik, E Ozkirimli, A Özgür Proceedings of the 1st Workshop on NLP for COVID-19 (Part 2) at EMNLP 2020, 2020 | 15 | 2020 |
User interface for Turkish word network KeNet R Özçelik, G Uludoğan, S Parlar, Ö Bakay, Ö Ergelen, OT Yıldız 2019 27th Signal Processing and Communications Applications Conference (SIU …, 2019 | 11 | 2019 |
Deep learning for low-data drug discovery: hurdles and opportunities D van Tilborg, H Brinkmann, E Criscuolo, L Rossen, R Özçelik, F Grisoni Current Opinion in Structural Biology 86, 102818, 2024 | 7 | 2024 |
Structure-based drug discovery with deep learning R Özçelik, D van Tilborg, J Jiménez-Luna, F Grisoni arXiv preprint arXiv:2212.13295, 2022 | 6 | 2022 |
A Framework for Improving the Generalizability of Drug–Target Affinity Prediction Models R Özçelik, A Bağ, B Atil, M Barsbey, A Özgür, E Ozkirimli Journal of Computational Biology 30 (11), 1226-1239, 2023 | 3* | 2023 |
Exploring data‐driven chemical SMILES tokenization approaches to identify key protein–ligand binding moieties AB Temizer, G Uludoğan, R Özçelik, T Koulani, E Ozkirimli, KO Ulgen, ... Molecular Informatics 43 (3), e202300249, 2024 | 1 | 2024 |
Chemical Language Modeling with Structured State Spaces R Özçelik, S de Ruiter, E Criscuolo, F Grisoni | 1* | 2024 |
A Computational Software for Training Robust Drug–Target Affinity Prediction Models: pydebiaseddta M Barsbey, R Özçelik, A Bağ, B Atil, A Özgür, E Ozkirimli Journal of Computational Biology 30 (11), 1240-1245, 2023 | 1 | 2023 |
Deep Supramolecular Language Processing for Co-crystal Prediction R Birolo, R Özçelik, A Aramini, R Gobetto, MR Chierotti, F Grisoni | | 2024 |
Leveraging Deep Chemical Language Processing for Co-crystal Prediction R Birolo, R Özçelik, A Aramini, R Gobetto, MR Chierotti, F Grisoni | | 2024 |
peptidy: A light-weight Python library for peptide representation in machine learning R Özçelik, L van Weesep, S de Ruiter, F Grisoni | | 2024 |
Building Efficient and Effective OpenQA Systems for Low-Resource Languages E Budur, R Özçelik, D Soylu, O Khattab, T Güngör, C Potts arXiv preprint arXiv:2401.03590, 2024 | | 2024 |
Biomolecular language processing for drug-target affinity prediction R Özçelik Thesis (MS)-Bogazici University. Institute for Graduate Studies in Science …, 2022 | | 2022 |
Türkçe Anlamsal Söylem ve Cümle Benzerligi AnalizleriIçin Veri Kümesi Olusturma Yöntemi G Ercan, O Erkek, O Açıkgöz, R Özçelik, S Parlar, OT Yıldız | | |
Türkçe Dogal DilIsleme için Arayüzler User Interfaces for Turkish Natural Language Processing G Uludogan, R Özçelik, S Parlar, G Ercan, OT Yıldız | | |