Orange: data mining toolbox in Python J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ... the Journal of machine Learning research 14 (1), 2349-2353, 2013 | 2399 | 2013 |
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution J König, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ... Nature structural & molecular biology 17 (7), 909-915, 2010 | 1232 | 2010 |
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43 JR Tollervey, T Curk, B Rogelj, M Briese, M Cereda, M Kayikci, J König, ... Nature neuroscience 14 (4), 452-458, 2011 | 1222 | 2011 |
Predictive data mining in clinical medicine: current issues and guidelines R Bellazzi, B Zupan International journal of medical informatics 77 (2), 81-97, 2008 | 1137 | 2008 |
Orange: From experimental machine learning to interactive data mining J Demšar, B Zupan, G Leban, T Curk Knowledge Discovery in Databases: PKDD 2004: 8th European Conference on …, 2004 | 629 | 2004 |
Rule evaluation measures: A unifying view N Lavrač, P Flach, B Zupan International conference on inductive logic programming, 174-185, 1999 | 599 | 1999 |
From hype to reality: data science enabling personalized medicine H Fröhlich, R Balling, N Beerenwinkel, O Kohlbacher, S Kumar, ... BMC medicine 16, 1-15, 2018 | 401 | 2018 |
Spam filtering using statistical data compression models A Bratko, B Filipič, GV Cormack, TR Lynam, B Zupan The Journal of Machine Learning Research 7, 2673-2698, 2006 | 365 | 2006 |
Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain B Rogelj, LE Easton, GK Bogu, LW Stanton, G Rot, T Curk, B Zupan, ... Scientific reports 2 (1), 603, 2012 | 328 | 2012 |
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain JR Tollervey, Z Wang, T Hortobágyi, JT Witten, K Zarnack, M Kayikci, ... Genome research 21 (10), 1572-1582, 2011 | 264 | 2011 |
iCLIP predicts the dual splicing effects of TIA-RNA interactions Z Wang, M Kayikci, M Briese, K Zarnack, NM Luscombe, G Rot, B Zupan, ... PLoS biology 8 (10), e1000530, 2010 | 264 | 2010 |
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions Y Sugimoto, J König, S Hussain, B Zupan, T Curk, M Frye, J Ule Genome biology 13, 1-13, 2012 | 262 | 2012 |
iCLIP-transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution J Konig, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ... JoVE (Journal of Visualized Experiments), e2638, 2011 | 244 | 2011 |
Data fusion by matrix factorization M Žitnik, B Zupan IEEE transactions on pattern analysis and machine intelligence 37 (1), 41-53, 2014 | 239 | 2014 |
Nomograms for visualization of naive Bayesian classifier M Možina, J Demšar, M Kattan, B Zupan Knowledge Discovery in Databases: PKDD 2004: 8th European Conference on …, 2004 | 215 | 2004 |
Conserved developmental transcriptomes in evolutionarily divergent species A Parikh, ER Miranda, M Katoh-Kurasawa, D Fuller, G Rot, L Zagar, ... Genome biology 11, 1-12, 2010 | 206 | 2010 |
Microarray data mining with visual programming T Curk, J Demsar, Q Xu, G Leban, U Petrovic, I Bratko, G Shaulsky, ... Bioinformatics 21 (3), 396-398, 2005 | 201 | 2005 |
Applications of qualitative multi-attribute decision models in health care M Bohanec, B Zupan, V Rajkovič International journal of medical informatics 58, 191-205, 2000 | 181 | 2000 |
Machine learning for survival analysis: a case study on recurrence of prostate cancer B Zupan, J Demšar, MW Kattan, JR Beck, I Bratko Artificial intelligence in medicine 20 (1), 59-75, 2000 | 179 | 2000 |
Genome-wide localization study of yeast Pex11 identifies peroxisome–mitochondria interactions through the ERMES complex MM Ušaj, M Brložnik, P Kaferle, M Žitnik, H Wolinski, F Leitner, ... Journal of molecular biology 427 (11), 2072-2087, 2015 | 164 | 2015 |