| The chicken gastrointestinal microbiome BB Oakley, HS Lillehoj, MH Kogut, WK Kim, JJ Maurer, A Pedroso, ... FEMS microbiology letters 360 (2), 100-112, 2014 | 721 | 2014 |
| Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies DM Gohl, P Vangay, J Garbe, A MacLean, A Hauge, A Becker, TJ Gould, ... Nature biotechnology 34 (9), 942-949, 2016 | 695 | 2016 |
| Pathogenomics of the Virulence Plasmids of Escherichia coli TJ Johnson, LK Nolan Microbiology and Molecular Biology Reviews 73 (4), 750-774, 2009 | 578 | 2009 |
| Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis KE Rodriguez-Siek, CW Giddings, C Doetkott, TJ Johnson, MK Fakhr, ... Microbiology 151 (6), 2097-2110, 2005 | 555 | 2005 |
| Population dynamics of Salmonella enterica serotypes in commercial egg and poultry production SL Foley, R Nayak, IB Hanning, TJ Johnson, J Han, SC Ricke Applied and environmental microbiology 77 (13), 4273-4279, 2011 | 523 | 2011 |
| Identification of Minimal Predictors of Avian Pathogenic Escherichia coli Virulence for Use as a Rapid Diagnostic Tool TJ Johnson, Y Wannemuehler, C Doetkott, SJ Johnson, SC Rosenberger, ... Journal of clinical microbiology 46 (12), 3987-3996, 2008 | 496 | 2008 |
| The Genome Sequence of Avian Pathogenic Escherichia coli Strain O1:K1:H7 Shares Strong Similarities with Human Extraintestinal Pathogenic E. coli Genomes TJ Johnson, S Kariyawasam, Y Wannemuehler, P Mangiamele, ... Journal of bacteriology 189 (8), 3228-3236, 2007 | 494 | 2007 |
| Captivity humanizes the primate microbiome JB Clayton, P Vangay, HU Huang, T Ward, BM Hillmann, GA Al-Ghalith, ... Proceedings of the National Academy of Sciences 113 (37), 10376-10381, 2016 | 470 | 2016 |
| Characterizing the APEC pathotype K Rodriguez-Siek, L Nolan, C Giddings, C Doetkott, T Johnson | 461 | 2005 |
| DNA Sequence of a ColV Plasmid and Prevalence of Selected Plasmid-Encoded Virulence Genes among Avian Escherichia coli Strains TJ Johnson, KE Siek, SJ Johnson, LK Nolan Journal of bacteriology 188 (2), 745-758, 2006 | 417 | 2006 |
| Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment JL Danzeisen, HB Kim, RE Isaacson, ZJ Tu, TJ Johnson PloS one 6 (11), e27949, 2011 | 416 | 2011 |
| Plasmid Replicon Typing of Commensal and Pathogenic Escherichia coli Isolates TJ Johnson, YM Wannemuehler, SJ Johnson, CM Logue, DG White, ... Applied and environmental microbiology 73 (6), 1976-1983, 2007 | 403 | 2007 |
| Salmonella pathogenicity and host adaptation in chicken-associated serovars SL Foley, TJ Johnson, SC Ricke, R Nayak, J Danzeisen Microbiology and Molecular Biology Reviews 77 (4), 582-607, 2013 | 363 | 2013 |
| Piglet gut microbial shifts early in life: causes and effects RB Guevarra, JH Lee, SH Lee, MJ Seok, DW Kim, BN Kang, TJ Johnson, ... Journal of animal science and biotechnology 10, 1-10, 2019 | 337 | 2019 |
| Comparison of Extraintestinal Pathogenic Escherichia coli Strains from Human and Avian Sources Reveals a Mixed Subset Representing Potential Zoonotic … TJ Johnson, Y Wannemuehler, SJ Johnson, AL Stell, C Doetkott, ... Applied and environmental microbiology 74 (22), 7043-7050, 2008 | 317 | 2008 |
| Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7 (2), 10.1128/mbio. 02162-15, 2016 | 307 | 2016 |
| Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae TJ Johnson, EM Bielak, D Fortini, LH Hansen, H Hasman, C Debroy, ... Plasmid 68 (1), 43-50, 2012 | 276 | 2012 |
| Opioid-induced gut microbial disruption and bile dysregulation leads to gut barrier compromise and sustained systemic inflammation S Banerjee, G Sindberg, F Wang, J Meng, U Sharma, L Zhang, P Dauer, ... Mucosal immunology 9 (6), 1418-1428, 2016 | 241 | 2016 |
| Morphine induces changes in the gut microbiome and metabolome in a morphine dependence model F Wang, J Meng, L Zhang, T Johnson, C Chen, S Roy Scientific reports 8 (1), 3596, 2018 | 222 | 2018 |
| Escherichia coli ST131-H22 as a Foodborne Uropathogen CM Liu, M Stegger, M Aziz, TJ Johnson, K Waits, L Nordstrom, L Gauld, ... MBio 9 (4), 10.1128/mbio. 00470-18, 2018 | 219 | 2018 |
