| The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions H Bolouri, JE Farrar, T Triche Jr, RE Ries, EL Lim, TA Alonzo, Y Ma, ... Nature medicine 24 (1), 103-112, 2018 | 713 | 2018 |
| A single-sample microarray normalization method to facilitate personalized-medicine workflows SR Piccolo, Y Sun, JD Campbell, ME Lenburg, AH Bild, WE Johnson Genomics 100 (6), 337-344, 2012 | 256 | 2012 |
| Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results M Rahman, LK Jackson, WE Johnson, DY Li, AH Bild, SR Piccolo Bioinformatics 31 (22), 3666-3672, 2015 | 222 | 2015 |
| Tools and techniques for computational reproducibility SR Piccolo, MB Frampton Gigascience 5 (1), s13742-016-0135-4, 2016 | 169 | 2016 |
| Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open … J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ... The Lancet Oncology 18 (1), 132-142, 2017 | 162 | 2017 |
| Combating subclonal evolution of resistant cancer phenotypes SW Brady, JA McQuerry, Y Qiao, SR Piccolo, G Shrestha, DF Jenkins, ... Nature communications 8 (1), 1231, 2017 | 154 | 2017 |
| Multiplatform single-sample estimates of transcriptional activation SR Piccolo, MR Withers, OE Francis, AH Bild, WE Johnson Proceedings of the National Academy of Sciences 110 (44), 17778-17783, 2013 | 114 | 2013 |
| Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease GI Allen, N Amoroso, C Anghel, V Balagurusamy, CJ Bare, D Beaton, ... Alzheimer's & Dementia 12 (6), 645-653, 2016 | 86 | 2016 |
| A cloud-based workflow to quantify transcript-expression levels in public cancer compendia PJ Tatlow, SR Piccolo Scientific reports 6 (1), 39259, 2016 | 82 | 2016 |
| DeuteRater: a tool for quantifying peptide isotope precision and kinetic proteomics BC Naylor, MT Porter, E Wilson, A Herring, S Lofthouse, A Hannemann, ... Bioinformatics 33 (10), 1514-1520, 2017 | 58 | 2017 |
| Potential new biomarkers for endometrial cancer MH Townsend, ZE Ence, AM Felsted, AC Parker, SR Piccolo, RA Robison, ... Cancer Cell International 19, 1-18, 2019 | 45 | 2019 |
| ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways Y Shen, M Rahman, SR Piccolo, D Gusenleitner, NN El-Chaar, L Cheng, ... Bioinformatics 31 (11), 1745-1753, 2015 | 42 | 2015 |
| Genomic pathway analysis reveals that EZH2 and HDAC4 represent mutually exclusive epigenetic pathways across human cancers AL Cohen, SR Piccolo, L Cheng, R Soldi, B Han, WE Johnson, AH Bild BMC medical genomics 6, 1-13, 2013 | 41 | 2013 |
| Histone deacetylase 6 (HDAC6) promotes the pro-survival activity of 14-3-3ζ via deacetylation of lysines within the 14-3-3ζ binding pocket JB Mortenson, LN Heppler, CJ Banks, VK Weerasekara, MD Whited, ... Journal of Biological Chemistry 290 (20), 12487-12496, 2015 | 38 | 2015 |
| Clinical and molecular models of Glioblastoma multiforme survival SR Piccolo, LJ Frey International Journal of Data Mining and Bioinformatics 7 (3), 245-265, 2013 | 38* | 2013 |
| Menthol induces cell-cycle arrest in PC-3 cells by down-regulating G2/M genes, including polo-like kinase 1 SH Kim, S Lee, SR Piccolo, K Allen-Brady, EJ Park, JN Chun, TW Kim, ... Biochemical and biophysical research communications 422 (3), 436-441, 2012 | 38 | 2012 |
| Predicting phenotypic severity of uncertain gene variants in the RET proto-oncogene DK Crockett, SR Piccolo, PG Ridge, RL Margraf, E Lyon, MS Williams, ... PLoS One 6 (3), e18380, 2011 | 37 | 2011 |
| Evaluation of genetic risk scores for lipid levels using genome-wide markers in the Framingham Heart Study SR Piccolo, RP Abo, K Allen-Brady, NJ Camp, S Knight, JL Anderson, ... BMC proceedings 3, 1-7, 2009 | 37 | 2009 |
| Membrane expression of thymidine kinase 1 and potential clinical relevance in lung, breast, and colorectal malignancies EG Weagel, W Burrup, R Kovtun, EJ Velazquez, AM Felsted, ... Cancer Cell International 18, 1-14, 2018 | 30 | 2018 |
| Systems approaches to cancer biology TC Archer, EJ Fertig, SJC Gosline, M Hafner, SK Hughes, BA Joughin, ... Cancer research 76 (23), 6774-6777, 2016 | 30 | 2016 |
