MAGIA, a web-based tool for miRNA and Genes Integrated Analysis G Sales, A Coppe, A Bisognin, M Biasiolo, S Bortoluzzi, C Romualdi Nucleic acids research 38 (suppl_2), W352-W359, 2010 | 187 | 2010 |
Novel definition files for human GeneChips based on GeneAnnot F Ferrari, S Bortoluzzi, A Coppe, A Sirota, M Safran, M Shmoish, S Ferrari, ... BMC bioinformatics 8, 1-6, 2007 | 145 | 2007 |
Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring M Milan, A Coppe, R Reinhardt, LM Cancela, RB Leite, C Saavedra, ... BMC genomics 12, 1-18, 2011 | 144 | 2011 |
MAGIA2: from miRNA and genes expression data integrative analysis to microRNA–transcription factor mixed regulatory circuits (2012 update) A Bisognin, G Sales, A Coppe, S Bortoluzzi, C Romualdi Nucleic acids research 40 (W1), W13-W21, 2012 | 138 | 2012 |
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically … A Coppe, JM Pujolar, GE Maes, PF Larsen, MM Hansen, L Bernatchez, ... BMC genomics 11, 1-13, 2010 | 119 | 2010 |
High incidence of activating STAT5B mutations in CD4-positive T-cell large granular lymphocyte leukemia EI Andersson, T Tanahashi, N Sekiguchi, VR Gasparini, S Bortoluzzi, ... Blood, The Journal of the American Society of Hematology 128 (20), 2465-2468, 2016 | 109 | 2016 |
Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eel JM Pujolar, IAM Marino, M Milan, A Coppe, GE Maes, F Capoccioni, ... BMC genomics 13, 1-21, 2012 | 91 | 2012 |
Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon M Vidotto, A Grapputo, E Boscari, F Barbisan, A Coppe, G Grandi, ... BMC genomics 14, 1-16, 2013 | 84 | 2013 |
Genome evolution in the cold: Antarctic icefish muscle transcriptome reveals selective duplications increasing mitochondrial function A Coppe, C Agostini, IAM Marino, L Zane, L Bargelloni, S Bortoluzzi, ... Genome biology and evolution 5 (1), 45-60, 2013 | 71 | 2013 |
Impact of host genes and strand selection on miRNA and miRNA* expression M Biasiolo, G Sales, M Lionetti, L Agnelli, K Todoerti, A Bisognin, A Coppe, ... PloS one 6 (8), e23854, 2011 | 68 | 2011 |
mRNA-Seq and microarray development for the Grooved carpet shell clam, Ruditapes decussatus: a functional approach to unravel host -parasite interaction RB Leite, M Milan, A Coppe, S Bortoluzzi, A Dos Anjos, R Reinhardt, ... Bmc Genomics 14, 1-17, 2013 | 48 | 2013 |
REEF: searching REgionally Enriched Features in genomes A Coppe, GA Danieli, S Bortoluzzi BMC bioinformatics 7, 1-7, 2006 | 45 | 2006 |
A-MADMAN: annotation-based microarray data meta-analysis tool A Bisognin, A Coppe, F Ferrari, D Risso, C Romualdi, S Bicciato, ... BMC bioinformatics 10, 1-11, 2009 | 43 | 2009 |
TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources L Lenzi, F Facchin, F Piva, M Giulietti, MC Pelleri, F Frabetti, L Vitale, ... BMC genomics 12, 1-18, 2011 | 39 | 2011 |
Genomic expression during human myelopoiesis F Ferrari, S Bortoluzzi, A Coppe, D Basso, S Bicciato, R Zini, C Gemelli, ... BMC genomics 8, 1-19, 2007 | 37 | 2007 |
A high definition picture of somatic mutations in chronic lymphoproliferative disorder of natural killer cells VR Gasparini, A Binatti, A Coppe, A Teramo, C Vicenzetto, G Calabretto, ... Blood cancer journal 10 (4), 42, 2020 | 32 | 2020 |
Somatic mutations in specific and connected subpathways are associated with short neuroblastoma patients’ survival and indicate proteins targetable at onset of disease MR Esposito, A Binatti, M Pantile, A Coppe, K Mazzocco, L Longo, ... International journal of cancer 143 (10), 2525-2536, 2018 | 32 | 2018 |
Sequencing and characterization of striped venus transcriptome expand resources for clam fishery genetics A Coppe, S Bortoluzzi, G Murari, IAM Marino, L Zane, C Papetti Public Library of Science 7 (9), e44185, 2012 | 29 | 2012 |
A multistep bioinformatic approach detects putative regulatory elements in gene promoters S Bortoluzzi, A Coppe, A Bisognin, C Pizzi, GA Danieli BMC bioinformatics 6, 1-15, 2005 | 29 | 2005 |
Small RNA sequencing uncovers new miRNAs and moRNAs differentially expressed in normal and primary myelofibrosis CD34+ cells P Guglielmelli, A Bisognin, C Saccoman, C Mannarelli, A Coppe, ... PloS one 10 (10), e0140445, 2015 | 25 | 2015 |