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Alessandro Coppe
Alessandro Coppe
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MAGIA, a web-based tool for miRNA and Genes Integrated Analysis
G Sales, A Coppe, A Bisognin, M Biasiolo, S Bortoluzzi, C Romualdi
Nucleic acids research 38 (suppl_2), W352-W359, 2010
1872010
Novel definition files for human GeneChips based on GeneAnnot
F Ferrari, S Bortoluzzi, A Coppe, A Sirota, M Safran, M Shmoish, S Ferrari, ...
BMC bioinformatics 8, 1-6, 2007
1452007
Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring
M Milan, A Coppe, R Reinhardt, LM Cancela, RB Leite, C Saavedra, ...
BMC genomics 12, 1-18, 2011
1442011
MAGIA2: from miRNA and genes expression data integrative analysis to microRNA–transcription factor mixed regulatory circuits (2012 update)
A Bisognin, G Sales, A Coppe, S Bortoluzzi, C Romualdi
Nucleic acids research 40 (W1), W13-W21, 2012
1382012
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically …
A Coppe, JM Pujolar, GE Maes, PF Larsen, MM Hansen, L Bernatchez, ...
BMC genomics 11, 1-13, 2010
1192010
High incidence of activating STAT5B mutations in CD4-positive T-cell large granular lymphocyte leukemia
EI Andersson, T Tanahashi, N Sekiguchi, VR Gasparini, S Bortoluzzi, ...
Blood, The Journal of the American Society of Hematology 128 (20), 2465-2468, 2016
1092016
Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eel
JM Pujolar, IAM Marino, M Milan, A Coppe, GE Maes, F Capoccioni, ...
BMC genomics 13, 1-21, 2012
912012
Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon
M Vidotto, A Grapputo, E Boscari, F Barbisan, A Coppe, G Grandi, ...
BMC genomics 14, 1-16, 2013
842013
Genome evolution in the cold: Antarctic icefish muscle transcriptome reveals selective duplications increasing mitochondrial function
A Coppe, C Agostini, IAM Marino, L Zane, L Bargelloni, S Bortoluzzi, ...
Genome biology and evolution 5 (1), 45-60, 2013
712013
Impact of host genes and strand selection on miRNA and miRNA* expression
M Biasiolo, G Sales, M Lionetti, L Agnelli, K Todoerti, A Bisognin, A Coppe, ...
PloS one 6 (8), e23854, 2011
682011
mRNA-Seq and microarray development for the Grooved carpet shell clam, Ruditapes decussatus: a functional approach to unravel host -parasite interaction
RB Leite, M Milan, A Coppe, S Bortoluzzi, A Dos Anjos, R Reinhardt, ...
Bmc Genomics 14, 1-17, 2013
482013
REEF: searching REgionally Enriched Features in genomes
A Coppe, GA Danieli, S Bortoluzzi
BMC bioinformatics 7, 1-7, 2006
452006
A-MADMAN: annotation-based microarray data meta-analysis tool
A Bisognin, A Coppe, F Ferrari, D Risso, C Romualdi, S Bicciato, ...
BMC bioinformatics 10, 1-11, 2009
432009
TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources
L Lenzi, F Facchin, F Piva, M Giulietti, MC Pelleri, F Frabetti, L Vitale, ...
BMC genomics 12, 1-18, 2011
392011
Genomic expression during human myelopoiesis
F Ferrari, S Bortoluzzi, A Coppe, D Basso, S Bicciato, R Zini, C Gemelli, ...
BMC genomics 8, 1-19, 2007
372007
A high definition picture of somatic mutations in chronic lymphoproliferative disorder of natural killer cells
VR Gasparini, A Binatti, A Coppe, A Teramo, C Vicenzetto, G Calabretto, ...
Blood cancer journal 10 (4), 42, 2020
322020
Somatic mutations in specific and connected subpathways are associated with short neuroblastoma patients’ survival and indicate proteins targetable at onset of disease
MR Esposito, A Binatti, M Pantile, A Coppe, K Mazzocco, L Longo, ...
International journal of cancer 143 (10), 2525-2536, 2018
322018
Sequencing and characterization of striped venus transcriptome expand resources for clam fishery genetics
A Coppe, S Bortoluzzi, G Murari, IAM Marino, L Zane, C Papetti
Public Library of Science 7 (9), e44185, 2012
292012
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
S Bortoluzzi, A Coppe, A Bisognin, C Pizzi, GA Danieli
BMC bioinformatics 6, 1-15, 2005
292005
Small RNA sequencing uncovers new miRNAs and moRNAs differentially expressed in normal and primary myelofibrosis CD34+ cells
P Guglielmelli, A Bisognin, C Saccoman, C Mannarelli, A Coppe, ...
PloS one 10 (10), e0140445, 2015
252015
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