| Gene genealogies, variation and evolution: a primer in coalescent theory J Hein, M Schierup, C Wiuf Oxford University Press, USA, 2004 | 790 | 2004 |
| Consequences of recombination on traditional phylogenetic analysis MH Schierup, J Hein Genetics 156 (2), 879-891, 2000 | 660 | 2000 |
| Pfold: RNA secondary structure prediction using stochastic context-free grammars B Knudsen, J Hein Nucleic acids research 31 (13), 3423-3428, 2003 | 620 | 2003 |
| [39] Unified approach to alignment and phylogenies J Hein Academic Press 183, 626-645, 1990 | 593 | 1990 |
| RNA secondary structure prediction using stochastic context-free grammars and evolutionary history. B Knudsen, J Hein Bioinformatics (Oxford, England) 15 (6), 446-454, 1999 | 464 | 1999 |
| Reconstructing evolution of sequences subject to recombination using parsimony J Hein Mathematical biosciences 98 (2), 185-200, 1990 | 347 | 1990 |
| A heuristic method to reconstruct the history of sequences subject to recombination J Hein Journal of Molecular Evolution 36, 396-405, 1993 | 319 | 1993 |
| On the complexity of comparing evolutionary trees J Hein, T Jiang, L Wang, K Zhang Discrete Applied Mathematics 71 (1-3), 153-169, 1996 | 284 | 1996 |
| A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given. J Hein Molecular Biology and Evolution 6 (6), 649-668, 1989 | 232 | 1989 |
| Genome-wide identification of human functional DNA using a neutral indel model G Lunter, CP Ponting, J Hein PLoS computational biology 2 (1), e5, 2006 | 222 | 2006 |
| Recombination as a point process along sequences C Wiuf, J Hein Theoretical population biology 55 (3), 248-259, 1999 | 222 | 1999 |
| The genetic diversity of European type PRRSV is similar to that of the North American type but is geographically skewed within Europe R Forsberg, T Storgaard, HS Nielsen, MB Oleksiewicz, P Cordioli, G Sala, ... Virology 299 (1), 38-47, 2002 | 216 | 2002 |
| Bayesian coestimation of phylogeny and sequence alignment G Lunter, I Miklós, A Drummond, JL Jensen, J Hein Bmc Bioinformatics 6, 1-10, 2005 | 209 | 2005 |
| Using biological networks to search for interacting loci in genome-wide association studies M Emily, T Mailund, J Hein, L Schauser, MH Schierup European Journal of Human Genetics 17 (10), 1231-1240, 2009 | 193 | 2009 |
| Autocatalytic sets and the origin of life W Hordijk, J Hein, M Steel Entropy 12 (7), 1733-1742, 2010 | 192 | 2010 |
| Uncertainty in homology inferences: assessing and improving genomic sequence alignment G Lunter, A Rocco, N Mimouni, A Heger, A Caldeira, J Hein Genome research 18 (2), 298-309, 2008 | 176 | 2008 |
| The coalescent with gene conversion C Wiuf, J Hein Genetics 155 (1), 451-462, 2000 | 164 | 2000 |
| Gene finding with a hidden Markov model of genome structure and evolution JS Pedersen, J Hein Bioinformatics 19 (2), 219-227, 2003 | 157 | 2003 |
| A simulation study of the reliability of recombination detection methods C Wiuf, T Christensen, J Hein Molecular Biology and Evolution 18 (10), 1929-1939, 2001 | 150 | 2001 |
| Recombination and the molecular clock MH Schierup, J Hein Molecular biology and evolution 17 (10), 1578-1579, 2000 | 146 | 2000 |
