PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification PD Thomas, A Kejariwal, MJ Campbell, H Mi, K Diemer, N Guo, I Ladunga, ... Nucleic acids research 31 (1), 334-341, 2003 | 751 | 2003 |
The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation G Blanc, I Agarkova, J Grimwood, A Kuo, A Brueggeman, DD Dunigan, ... Genome biology 13, 1-12, 2012 | 363 | 2012 |
Practical guidelines for the comprehensive analysis of ChIP-seq data T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ... PLoS computational biology 9 (11), e1003326, 2013 | 347 | 2013 |
Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana K Van Dijk, Y Ding, S Malkaram, JJM Riethoven, R Liu, J Yang, P Laczko, ... BMC plant biology 10, 1-12, 2010 | 234 | 2010 |
Comparisons of eukaryotic genomic sequences. S Karlin, I Ladunga Proceedings of the National Academy of Sciences 91 (26), 12832-12836, 1994 | 220 | 1994 |
Heterogeneity of genomes: measures and values. S Karlin, I Ladunga, BE Blaisdell Proceedings of the National Academy of Sciences 91 (26), 12837-12841, 1994 | 219 | 1994 |
The Highly Similar Arabidopsis Homologs of Trithorax ATX1 and ATX2 Encode Proteins with Divergent Biochemical Functions A Saleh, R Alvarez-Venegas, M Yilmaz, O Le, G Hou, M Sadder, ... The plant cell 20 (3), 568-579, 2008 | 217 | 2008 |
Transcriptome-wide changes in Chlamydomonas reinhardtii gene expression regulated by carbon dioxide and the CO2-concentrating mechanism regulator CIA5/CCM1 W Fang, Y Si, S Douglass, D Casero, SS Merchant, M Pellegrini, ... The Plant Cell 24 (5), 1876-1893, 2012 | 214 | 2012 |
The sigma-1 receptor enhances brain plasticity and functional recovery after experimental stroke K Ruscher, M Shamloo, M Rickhag, I Ladunga, L Soriano, L Gisselsson, ... Brain 134 (3), 732-746, 2011 | 170 | 2011 |
Activation of the Carbon Concentrating Mechanism by CO2 Deprivation Coincides with Massive Transcriptional Restructuring in Chlamydomonas reinhardtii AJ Brueggeman, DS Gangadharaiah, MF Cserhati, D Casero, DP Weeks, ... The Plant Cell 24 (5), 1860-1875, 2012 | 137 | 2012 |
RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses D Panda, A Das, PX Dinh, S Subramaniam, D Nayak, NJ Barrows, ... Proceedings of the National Academy of Sciences 108 (47), 19036-19041, 2011 | 122 | 2011 |
Transcriptional profiling of the sperm storage organs of Drosophila melanogaster AM Prokupek, SD Kachman, I Ladunga, LG Harshman Insect molecular biology 18 (4), 465-475, 2009 | 88 | 2009 |
More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature I Ladunga Nucleic acids research 35 (2), 433-440, 2007 | 77 | 2007 |
Finding homologs in amino acid sequences using network BLAST searches I Ladunga Current Protocols in Bioinformatics 25 (1), 3.4. 1-3.4. 34, 2009 | 72 | 2009 |
Browsable database for biological use P Thomas, A Kejariwal, M Champbell, H Mi, K Diemer, N Guo, I Ladunga, ... US Patent App. 10/731,875, 2005 | 57 | 2005 |
Improving signal peptide prediction accuracy by simulated neural network I Ladunga, F Czakó, I Csabai, T Geszti Bioinformatics 7 (4), 485-487, 1991 | 55 | 1991 |
Large-scale predictions of secretory proteins from mammalian genomic and EST sequences I Ladunga Current Opinion in Biotechnology 11 (1), 13-18, 2000 | 54 | 2000 |
Amino acid substitutions preserve protein folding by conserving steric and hydrophobicity properties. I Ladunga, RF Smith Protein engineering 10 (3), 187-196, 1997 | 50 | 1997 |
The Small Ubiquitin-Like Modifier (SUMO) and SUMO-Conjugating System of Chlamydomonas reinhardtii Y Wang, I Ladunga, AR Miller, KM Horken, T Plucinak, DP Weeks, ... Genetics 179 (1), 177-192, 2008 | 36 | 2008 |
PHYSEAN: PHYsical SEquence ANalysis for the identification of protein domains on the basis of physical and chemical properties of amino acids I Ladunga Bioinformatics 15 (12), 1028-1038, 1999 | 34 | 1999 |