| A series of PDB-related databanks for everyday needs WG Touw, C Baakman, J Black, TAH Te Beek, E Krieger, RP Joosten, ... Nucleic acids research 43 (D1), D364-D368, 2015 | 900 | 2015 |
| A series of PDB related databases for everyday needs RP Joosten, TAH Te Beek, E Krieger, ML Hekkelman, RWW Hooft, ... Nucleic acids research 39 (suppl_1), D411-D419, 2010 | 858 | 2010 |
| The PDB_REDO server for macromolecular structure model optimization RP Joosten, F Long, GN Murshudov, A Perrakis IUCrJ 1 (4), 213-220, 2014 | 797 | 2014 |
| A new generation of crystallographic validation tools for the Protein Data Bank RJ Read, PD Adams, WB Arendall III, AT Brunger, P Emsley, RP Joosten, ... Structure 19, 1395-1412, 2011 | 497 | 2011 |
| PDB_REDO: automated re-refinement of X-ray structure models in the PDB RP Joosten, J Salzemann, V Bloch, H Stockinger, AC Berglund, ... Journal of applied crystallography 42 (3), 376-384, 2009 | 257 | 2009 |
| AlphaFill: enriching AlphaFold models with ligands and cofactors ML Hekkelman, I de Vries, RP Joosten, A Perrakis Nature Methods, 1-9, 2022 | 243 | 2022 |
| PDB_REDO: constructive validation, more than just looking for errors RP Joosten, K Joosten, GN Murshudov, A Perrakis Acta Crystallographica Section D: Biological Crystallography 68 (4), 484-496, 2012 | 226 | 2012 |
| The CCP4 suite: integrative software for macromolecular crystallography J Agirre, M Atanasova, H Bagdonas, CB Ballard, A Baslé, ... Acta Crystallographica Section D: Structural Biology 79 (6), 449-461, 2023 | 167 | 2023 |
| A global Ramachandran score identifies protein structures with unlikely stereochemistry OV Sobolev, PV Afonine, NW Moriarty, ML Hekkelman, RP Joosten, ... Structure 28 (11), 1249-1258. e2, 2020 | 116 | 2020 |
| Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank RP Joosten, K Joosten, SX Cohen, G Vriend, A Perrakis Bioinformatics 27 (24), 3392-3398, 2011 | 103 | 2011 |
| The first step of peptide selection in antigen presentation by MHC class I molecules MA Garstka, A Fish, PHN Celie, RP Joosten, GMC Janssen, I Berlin, ... Proceedings of the National Academy of Sciences 112 (5), 1505-1510, 2015 | 101 | 2015 |
| Structure of NPP1, an ectonucleotide pyrophosphatase/phosphodiesterase involved in tissue calcification S Jansen, A Perrakis, C Ulens, C Winkler, M Andries, RP Joosten, ... Structure 20 (11), 1948-1959, 2012 | 101 | 2012 |
| Re-refinement from deposited X-ray data can deliver improved models for most PDB entries RP Joosten, T Womack, G Vriend, G Bricogne Acta Crystallographica Section D: Biological Crystallography 65 (2), 176-185, 2009 | 96 | 2009 |
| Steroid binding to Autotaxin links bile salts and lysophosphatidic acid signalling WJ Keune, J Hausmann, R Bolier, D Tolenaars, A Kremer, T Heidebrecht, ... Nature communications 7 (1), 11248, 2016 | 88 | 2016 |
| Homology modelling and spectroscopy, a never-ending love story H Venselaar, RP Joosten, B Vroling, CAB Baakman, ML Hekkelman, ... European Biophysics Journal 39, 551-563, 2010 | 87 | 2010 |
| Tryptophan depletion results in tryptophan-to-phenylalanine substitutants A Pataskar, J Champagne, R Nagel, J Kenski, M Laos, J Michaux, HS Pak, ... Nature 603 (7902), 721-727, 2022 | 76 | 2022 |
| PDB improvement starts with data deposition RP Joosten, G Vriend Science 317 (5835), 195-196, 2007 | 50 | 2007 |
| Structure of a calcium-deficient form of influenza virus neuraminidase: implications for substrate binding BJ Smith, T Huyton, RP Joosten, JL McKimm-Breschkin, JG Zhang, ... Biological Crystallography 500 (62), 1002-1011, 2006 | 47 | 2006 |
| PDBx/mmCIF ecosystem: foundational semantic tools for structural biology JD Westbrook, JY Young, C Shao, Z Feng, V Guranovic, CL Lawson, ... Journal of molecular biology 434 (11), 167599, 2022 | 46 | 2022 |
| Homology‐based hydrogen bond information improves crystallographic structures in the PDB B van Beusekom, WG Touw, M Tatineni, S Somani, G Rajagopal, J Luo, ... Protein Science 27 (3), 798-808, 2018 | 46 | 2018 |
Anastassis PerrakisDivision of Biochemistry, Netherlands Cancer Institute and Oncode Institute, Prof Utrecht U在 nki.nl 的电子邮件经过验证
