Reconstruction of ancient microbial genomes from the human gut MC Wibowo, Z Yang, M Borry, A Hübner, KD Huang, BT Tierney, ... Nature 594 (7862), 234-239, 2021 | 187 | 2021 |
Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager JAF Yates, TC Lamnidis, M Borry, AA Valtueña, Z Fagernäs, S Clayton, ... PeerJ 9, e10947, 2021 | 80* | 2021 |
CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content M Borry, B Cordova, A Perri, M Wibowo, TP Honap, J Ko, J Yu, K Britton, ... PeerJ 8, e9001, 2020 | 47 | 2020 |
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir JA Fellows Yates, A Andrades Valtueña, ÅJ Vågene, B Cribdon, ... Scientific Data 8 (1), 31, 2021 | 31 | 2021 |
PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly M Borry, A Hübner, AB Rohrlach, C Warinner PeerJ 9, e11845, 2021 | 25 | 2021 |
Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic M Klapper, A Hübner, A Ibrahim, I Wasmuth, M Borry, VG Haensch, ... Science 380 (6645), 619-624, 2023 | 23 | 2023 |
CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content. PeerJ 8: e9001 M Borry, B Cordova, A Perri, M Wibowo, TP Honap, J Ko, J Yu, K Britton, ... | 8 | 2020 |
Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification M Borry Journal of Open Source Software 4, 1540, 2019 | 8 | 2019 |
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Sci Data 8: 31 JA Fellows Yates, A Andrades Valtueña, ÅJ Vågene, B Cribdon, ... | 7 | 2021 |
PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly. PeerJ 9: e11845 M Borry, A Hübner, AB Rohrlach, C Warinner | 6 | 2021 |
Taxpasta: Taxonomic profile aggregation and standardisation ME Beber, M Borry, S Stamouli, JAF Yates Journal of Open Source Software 8 (87), 5627, 2023 | 2 | 2023 |
sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files M Borry, A Hübner, C Warinner Journal of Open Source Software 7 (74), 4360, 2022 | 2 | 2022 |
Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT M Borry, A Forsythe, A Andrades Valtueña, A Hübner, A Ibrahim, ... F1000Research 12, 926, 2024 | 1 | 2024 |
nf-core/taxprofiler: Highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling S Stamouli, ME Beber, T Normark, TA Christensen, L Andersson-Li, ... bioRxiv, 2023.10. 20.563221, 2023 | 1 | 2023 |
Expanding the ancient DNA bioinformatics toolbox, and its applications to archeological microbiomes M Borry | | 2023 |
Foldit, un jeu pour faire de la recherche F BERNARDON, M BORRY, M POTHIER La Recherche (Imprimé), 68-71, 2012 | | 2012 |
Facilitating accessible, rapid, and appropriate processing o f ancient metagenomic data with AMDirT [version 1; peer M Borry, A Forsythe, AA Valtueña, A Hübner, A Ibrahim, A Quagliariello, ... | | |