Sparse and compositionally robust inference of microbial ecological networks ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau PLoS computational biology 11 (5), e1004226, 2015 | 1280 | 2015 |
Helminth infection promotes colonization resistance via type 2 immunity D Ramanan, R Bowcutt, SC Lee, MS Tang, ZD Kurtz, Y Ding, K Honda, ... Science 352 (6285), 608-612, 2016 | 402 | 2016 |
Alternatively activated macrophages derived from monocytes and tissue macrophages are phenotypically and functionally distinct UM Gundra, NM Girgis, D Ruckerl, S Jenkins, LN Ward, ZD Kurtz, ... Blood, The Journal of the American Society of Hematology 123 (20), e110-e122, 2014 | 387 | 2014 |
Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota SC Lee, MS Tang, YAL Lim, SH Choy, ZD Kurtz, LM Cox, UM Gundra, ... PLoS Neglected Tropical Diseases 8 (5), e2880, 2014 | 382 | 2014 |
Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet D Mahana, CM Trent, ZD Kurtz, NA Bokulich, T Battaglia, J Chung, ... Genome medicine 8, 1-20, 2016 | 180 | 2016 |
Fungi stabilize connectivity in the lung and skin microbial ecosystems L Tipton, CL Müller, ZD Kurtz, L Huang, E Kleerup, A Morris, R Bonneau, ... Microbiome 6, 1-14, 2018 | 162 | 2018 |
A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity VE Ruiz, T Battaglia, ZD Kurtz, L Bijnens, A Ou, I Engstrand, X Zheng, ... Nature communications 8 (1), 518, 2017 | 121 | 2017 |
Roles of putative type II secretion and type IV pilus systems in the virulence of uropathogenic Escherichia coli R Kulkarni, BK Dhakal, ES Slechta, Z Kurtz, MA Mulvey, DG Thanassi PLoS One 4 (3), e4752, 2009 | 91 | 2009 |
Oxalobacter formigenes-associated host features and microbial community structures examined using the American Gut Project M Liu, H Koh, ZD Kurtz, T Battaglia, A PeBenito, H Li, L Nazzal, MJ Blaser Microbiome 5, 1-17, 2017 | 63 | 2017 |
Shrinkage improves estimation of microbial associations under different normalization methods M Badri, ZD Kurtz, R Bonneau, CL Müller NAR genomics and bioinformatics 2 (4), lqaa100, 2020 | 44* | 2020 |
Lung microbiome and host immune tone in subjects with idiopathic pulmonary fibrosis treated with inhaled interferon-γ J Wang, M Lesko, MH Badri, BC Kapoor, BG Wu, Y Li, GC Smaldone, ... ERJ open research 3 (3), 2017 | 32 | 2017 |
SpiecEasi: Sparse inverse covariance for ecological statistical inference Z Kurtz, C Mueller, E Miraldi, R Bonneau R package version 1 (2), 2017 | 31 | 2017 |
Disentangling microbial associations from hidden environmental and technical factors via latent graphical models ZD Kurtz, R Bonneau, CL Müller BioRxiv, 2019.12. 21.885889, 2019 | 18 | 2019 |
Generalized stability approach for regularized graphical models CL Müller, R Bonneau, Z Kurtz arXiv preprint arXiv:1605.07072, 2016 | 18 | 2016 |
Glycosuria alters uropathogenic Escherichia coli global gene expression and virulence MJ Islam, K Bagale, PP John, Z Kurtz, R Kulkarni mSphere, e00004-22, 2022 | 9 | 2022 |
Precision Discovery of Novel Inhibitors of Human Cancer Target HsMetAP1 from Vast Unexplored Metagenomic Diversity OW Liu, S Akers, G Alvarez, S Brown, W Cai, Z Charlop-Powers, ... bioRxiv, 2022.06. 11.495772, 2022 | 1 | 2022 |
Correction: helminth colonization is associated with increased diversity of the gut microbiota SC Lee, MS Tang, YAL Lim, SH Choy, ZD Kurtz, LM Cox, UM Gundra, ... PLoS neglected tropical diseases 15 (4), e0009325, 2021 | 1 | 2021 |
Methods and apparatus for efficient and accurate assembly of long-read genomic sequences Z Charlop-powers, ZD Kurtz, BM Hover, SL Colletti US Patent App. 17/797,317, 2023 | | 2023 |
Lower Airway Microbiota Is Associated With Persistent Inflammation In The Lower Airways During Anti-Inflammatory Therapy With Inhaled Interferon-Gamma MB Lesko, J Wang, MH Badri, B Kapoor, Y Li, GC Smaldone, Z Kurtz, ... B21. ALTERATIONS IN MICROBIOME AND VIROME IN LUNG DISEASE, A2933-A2933, 2017 | | 2017 |
Helminth colonization is associated with increased diversity of the gut microbiota. LSC Lee SooChing, TMS Tang MeiSan, YAL Lim, CSH Choy SeowHuey, ... | | 2014 |