Localizing frustration in native proteins and protein assemblies DU Ferreiro, JA Hegler, EA Komives, PG Wolynes Proceedings of the National Academy of Sciences 104 (50), 19819-19824, 2007 | 349 | 2007 |
Xanthomonas campestris pv. campestrisgum Mutants: Effects on Xanthan Biosynthesis and Plant Virulence F Katzen, DU Ferreiro, CG Oddo, MV Ielmini, A Becker, A Pühler, L Ielpi Journal of bacteriology 180 (7), 1607-1617, 1998 | 325 | 1998 |
Frustration in biomolecules DU Ferreiro, EA Komives, PG Wolynes Quarterly reviews of biophysics 47 (4), 285-363, 2014 | 282 | 2014 |
On the role of frustration in the energy landscapes of allosteric proteins DU Ferreiro, JA Hegler, EA Komives, PG Wolynes Proceedings of the National Academy of Sciences 108 (9), 3499-3503, 2011 | 203 | 2011 |
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics RG Parra, NP Schafer, LG Radusky, MY Tsai, AB Guzovsky, PG Wolynes, ... Nucleic acids research 44 (W1), W356-W360, 2016 | 202 | 2016 |
Protein frustratometer: a tool to localize energetic frustration in protein molecules M Jenik, RG Parra, LG Radusky, A Turjanski, PG Wolynes, DU Ferreiro Nucleic acids research 40 (W1), W348-W351, 2012 | 169 | 2012 |
Molecular mechanisms of system control of NF-κB signaling by IκBα DU Ferreiro, EA Komives Biochemistry 49 (8), 1560-1567, 2010 | 165 | 2010 |
Consequences of localized frustration for the folding mechanism of the IM7 protein L Sutto, J Lätzer, JA Hegler, DU Ferreiro, PG Wolynes Proceedings of the National Academy of Sciences 104 (50), 19825-19830, 2007 | 112 | 2007 |
Folding landscapes of ankyrin repeat proteins: experiments meet theory D Barrick, DU Ferreiro, EA Komives Current Opinion in structural biology 18 (1), 27-34, 2008 | 108 | 2008 |
The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family DU Ferreiro, SS Cho, EA Komives, PG Wolynes Journal of molecular biology 354 (3), 679-692, 2005 | 105 | 2005 |
Fuzziness and frustration in the energy landscape of protein folding, function, and assembly S Gianni, MI Freiberger, P Jemth, DU Ferreiro, PG Wolynes, M Fuxreiter Accounts of chemical research 54 (5), 1251-1259, 2021 | 98 | 2021 |
Frustration, function and folding DU Ferreiro, EA Komives, PG Wolynes Current opinion in structural biology 48, 68-73, 2018 | 83 | 2018 |
Stabilizing IκBα by “consensus” design DU Ferreiro, CF Cervantes, SME Truhlar, SS Cho, PG Wolynes, ... Journal of molecular biology 365 (4), 1201-1216, 2007 | 79 | 2007 |
The energy landscapes of repeat-containing proteins: topology, cooperativity, and the folding funnels of one-dimensional architectures DU Ferreiro, AM Walczak, EA Komives, PG Wolynes PLoS computational biology 4 (5), e1000070, 2008 | 76 | 2008 |
Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes PO Craig, J Lätzer, P Weinkam, RMB Hoffman, DU Ferreiro, EA Komives, ... Journal of the American Chemical Society 133 (43), 17463-17472, 2011 | 68 | 2011 |
Structural and energetic characterization of the ankyrin repeat protein family RG Parra, R Espada, N Verstraete, DU Ferreiro PLoS computational biology 11 (12), e1004659, 2015 | 56 | 2015 |
A protein–DNA binding mechanism proceeds through multi-state or two-state parallel pathways DU Ferreiro, G de Prat-Gay Journal of molecular biology 331 (1), 89-99, 2003 | 54 | 2003 |
Local frustration around enzyme active sites MI Freiberger, AB Guzovsky, PG Wolynes, RG Parra, DU Ferreiro Proceedings of the National Academy of Sciences 116 (10), 4037-4043, 2019 | 53 | 2019 |
Frustration in fuzzy protein complexes leads to interaction versatility MI Freiberger, PG Wolynes, DU Ferreiro, M Fuxreiter The Journal of Physical Chemistry B 125 (10), 2513-2520, 2021 | 50 | 2021 |
Amino acid metabolism conflicts with protein diversity T Krick, N Verstraete, LG Alonso, DA Shub, DU Ferreiro, M Shub, ... Molecular biology and evolution 31 (11), 2905-2912, 2014 | 50 | 2014 |