The genome architecture of the Collaborative Cross mouse genetic reference population Collaborative Cross Consortium Genetics 190 (2), 389-401, 2012 | 467 | 2012 |
Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. JJ Crowley, V Zhabotynsky, W Sun, S Huang, IK Pakatci, Y Kim, ... Nature Genetics, 2015 | 219 | 2015 |
The association between copy number aberration, DNA methylation and gene expression in tumor samples W Sun, P Bunn, C Jin, P Little, V Zhabotynsky, CM Perou, DN Hayes, ... Nucleic acids research 46 (6), 3009-3018, 2018 | 71 | 2018 |
A Novel Statistical Approach for Jointly Analyzing RNA-Seq Data from F1 Reciprocal Crosses and Inbred Lines F Zou, W Sun, JJ Crowley, V Zhabotynsky, PF Sullivan, ... Genetics 197 (1), 389-399, 2014 | 32 | 2014 |
Transcriptome atlases of mouse brain reveals differential expression across brain regions and genetic backgrounds W Sun, S Lee, V Zhabotynsky, F Zou, FA Wright, JJ Crowley, Z Yun, ... G3: Genes| Genomes| Genetics 2 (2), 203-211, 2012 | 26 | 2012 |
eQTL mapping using allele-specific count data is computationally feasible, powerful, and provides individual-specific estimates of genetic effects V Zhabotynsky, L Huang, P Little, YJ Hu, F Pardo-Manuel de Villena, ... PLoS Genetics 18 (3), e1010076, 2022 | 18 | 2022 |
IsoDOT Detects Differential RNA-isoform Expression/Usage with respect to a Categorical or Continuous Covariate with High Sensitivity and Specificity W Sun, Y Liu, JJ Crowley, TH Chen, H Zhou, H Chu, S Huang, PF Kuan, ... Journal of the American Statistical Association 110 (511), 975-986, 2015 | 11 | 2015 |
Sexually dimorphic methylation patterns characterize the placenta and blood from extremely preterm newborns HP Santos Jr, AE Enggasser, J Clark, K Roell, V Zhabotynsky, WA Gower, ... BMC biology 21 (1), 173, 2023 | 8 | 2023 |
Antipsychotic behavioral phenotypes in the mouse collaborative cross recombinant inbred inter-crosses (RIX) P Giusti-Rodríguez, JG Xenakis, JJ Crowley, RJ Nonneman, DM DeCristo, ... G3: Genes, Genomes, Genetics 10 (9), 3165-3177, 2020 | 6 | 2020 |
A Statistical Method for Joint Estimation of Cis-eQTLs and Parent-of-Origin Effects Under Family Trio Design V Zhabotynsky, K Inoue, T Magnuson, J Mauro Calabrese, W Sun Biometrics 75 (3), 864-874, 2019 | 6 | 2019 |
Bayesian modeling of skewed X inactivation in genetically diverse mice identifies a novel Xce allele associated with copy number changes KY Sun, D Oreper, SA Schoenrock, R McMullan, P Giusti-Rodríguez, ... Genetics 218 (1), iyab034, 2021 | 5 | 2021 |
Pervasive allelic imbalance revealed by allele-specific gene expression in highly divergent mouse crosses JJ Crowley, V Zhabotynsky, W Sun, S Huang, K Pakatci, Y Kim Nat genet, 2015 | 5 | 2015 |
Corrigendum: analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance JJ Crowley, V Zhabotynsky, W Sun, S Huang, IK Pakatci, Y Kim, JR Wang, ... Nature genetics 47 (6), 690, 2015 | 3 | 2015 |
asSeq: A set of tools for the study of allele-specific RNA-seq data W Sun, V Zhabotynsky | 3 | 2013 |
Epigenetic associations in HPA axis genes related to bronchopulmonary dysplasia and antenatal steroids KM Hodge, V Zhabotynsky, AA Burt, BS Carter, RC Fry, J Helderman, ... Pediatric Research, 1-9, 2024 | 2 | 2024 |
Cell type-specific Expression Quantitative Trait Loci P Little, V Zhabotynsky, Y Li, D Lin, W Sun bioRxiv, 2022.03. 31.486605, 2022 | 2 | 2022 |
IsoDOT Detects Differential RNA-isoform Expression/Usage with respect to a Categorical or Continuous Covariate with High Sensitivity and Specificity W Sun, Y Liu, JJ Crowley, TH Chen, H Zhou, H Chu, S Huang, PF Kuan, ... arXiv preprint arXiv:1402.0136, 2014 | 2 | 2014 |
A computational method for cell type-specific expression quantitative trait loci mapping using bulk RNA-seq data P Little, S Liu, V Zhabotynsky, Y Li, DY Lin, W Sun Nature Communications 14 (1), 3030, 2023 | 1 | 2023 |
Distribution and vulnerability of transcriptional outputs across the genome in Myc-amplified medulloblastoma cells R Yang, W Wang, M Dong, K Roso, P Greer, X Bao, CJ Pirozzi, DD Bigner, ... bioRxiv, 2021.06. 07.447394, 2021 | 1 | 2021 |
Bayesian modeling of skewed X inactivation in genetically diverse mice identifies a novelXceallele associated with copy number changes KY Sun, D Oreper, SA Schoenrock, R McMullan, P Giusti-Rodríguez, ... | 1 | 2020 |