A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1930 | 2014 |
The human transcriptome across tissues and individuals M Melé, PG Ferreira, F Reverter, DS DeLuca, J Monlong, M Sammeth, ... Science 348 (6235), 660-665, 2015 | 1319 | 2015 |
Engineered riboregulators enable post-transcriptional control of gene expression FJ Isaacs, DJ Dwyer, C Ding, DD Pervouchine, CR Cantor, JJ Collins Nature biotechnology 22 (7), 841-847, 2004 | 717 | 2004 |
Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010 | 458 | 2010 |
Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014 | 334 | 2014 |
The effects of death and post-mortem cold ischemia on human tissue transcriptomes PG Ferreira, M Muñoz-Aguirre, F Reverter, CP Sa Godinho, A Sousa, ... Nature communications 9 (1), 490, 2018 | 268 | 2018 |
A benchmark for RNA-seq quantification pipelines M Teng, MI Love, CA Davis, S Djebali, A Dobin, BR Graveley, S Li, ... Genome biology 17, 1-12, 2016 | 226 | 2016 |
Slow and fast inhibition and an H-current interact to create a theta rhythm in a model of CA1 interneuron network HG Rotstein, DD Pervouchine, CD Acker, MJ Gillies, JA White, EH Buhl, ... Journal of neurophysiology 94 (2), 1509-1518, 2005 | 201 | 2005 |
Neuronal metabolism governs cortical network response state MO Cunningham, DD Pervouchine, C Racca, NJ Kopell, CH Davies, ... Proceedings of the National Academy of Sciences 103 (14), 5597-5601, 2006 | 198 | 2006 |
Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction A Frankish, B Uszczynska, GRS Ritchie, JM Gonzalez, D Pervouchine, ... BMC genomics 16, 1-11, 2015 | 115 | 2015 |
Gamma and theta rhythms in biophysical models of hippocampal circuits N Kopell, C Börgers, D Pervouchine, P Malerba, A Tort Hippocampal microcircuits: A computational modeler’s resource book, 423-457, 2010 | 111 | 2010 |
Intron-centric estimation of alternative splicing from RNA-seq data DD Pervouchine, DG Knowles, R Guigo Bioinformatics 29 (2), 273-274, 2013 | 103 | 2013 |
IRIS: intermolecular RNA interaction search DD Pervouchine Genome Informatics 15 (2), 92-101, 2004 | 100 | 2004 |
Gene-specific patterns of expression variation across organs and species A Breschi, S Djebali, J Gillis, DD Pervouchine, A Dobin, CA Davis, ... Genome biology 17, 1-13, 2016 | 98 | 2016 |
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ... Nature communications 6 (1), 5903, 2015 | 89 | 2015 |
Modulation of alternative splicing by long-range RNA structures in Drosophila VA Raker, AA Mironov, MS Gelfand, DD Pervouchine Nucleic acids research 37 (14), 4533-4544, 2009 | 80 | 2009 |
RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA LV Danilova, DD Pervouchine, AV Favorov, AA Mironov Journal of bioinformatics and computational biology 4 (02), 589-596, 2006 | 78 | 2006 |
Evidence for widespread association of mammalian splicing and conserved long-range RNA structures DD Pervouchine, EE Khrameeva, MY Pichugina, OV Nikolaienko, ... Rna 18 (1), 1-15, 2012 | 69 | 2012 |
Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay D Pervouchine, Y Popov, A Berry, B Borsari, A Frankish, R Guigó Nucleic acids research 47 (10), 5293-5306, 2019 | 59 | 2019 |
Low-dimensional maps encoding dynamics in entorhinal cortex and hippocampus DD Pervouchine, TI Netoff, HG Rotstein, JA White, MO Cunningham, ... Neural computation 18 (11), 2617-2650, 2006 | 58 | 2006 |