| Communities of Niche-optimized Strains (CoNoS)–Design and creation of stable, genome-reduced co-cultures S Schito, R Zuchowski, D Bergen, D Strohmeier, B Wollenhaupt, P Menke, ... Metabolic engineering 73, 91-103, 2022 | 17 | 2022 |
| When a single lineage is not enough: uncertainty-aware tracking for spatio-temporal live-cell image analysis A Theorell, J Seiffarth, A Grünberger, K Nöh Bioinformatics 35 (7), 1221-1228, 2019 | 16 | 2019 |
| Vizardous: interactive analysis of microbial populations with single cell resolution S Helfrich, CE Azzouzi, C Probst, J Seiffarth, A Grünberger, W Wiechert, ... Bioinformatics 31 (23), 3875-3877, 2015 | 15 | 2015 |
| microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation T Scherr, J Seiffarth, B Wollenhaupt, O Neumann, MP Schilling, ... Plos one 17 (11), e0277601, 2022 | 12 | 2022 |
| ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud J Seiffarth, T Scherr, B Wollenhaupt, O Neumann, H Scharr, D Kohlheyer, ... SoftwareX 26, 101638, 2024 | 10 | 2024 |
| CellSium: versatile cell simulator for microcolony ground truth generation CC Sachs, K Ruzaeva, J Seiffarth, W Wiechert, B Berkels, K Nöh Bioinformatics advances 2 (1), vbac053, 2022 | 7 | 2022 |
| Enabling oxygen-controlled microfluidic cultures for spatiotemporal microbial single-cell analysis K Kasahara, M Leygeber, J Seiffarth, K Ruzaeva, T Drepper, K Nöh, ... Frontiers in microbiology 14, 1198170, 2023 | 6 | 2023 |
| Data for-Tracking one in a million: Performance of automated tracking on a large-scale microbial data set J Seiffarth, L Blöbaum, K Löffler, T Scherr, A Grünberger, H Scharr, ... Zenodo. Accessed March 28, 2023, 2022 | 6 | 2022 |
| Automated error detection in physiotherapy training M Jovanović, J Seiffarth, E Kutafina, SM Jonas Health Informatics Meets eHealth, 164-171, 2018 | 5 | 2018 |
| microbeSEG: accurate cell segmentation with OMERO data management T Scherr, J Seiffarth, B Wollenhaupt, O Neumann, P Marcel, D Kohlheyer, ... bioRxiv, 2022 | 3 | 2022 |
| Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustness metrics J Seiffarth, L Blöbaum, RD Paul, N Friederich, AJ Sitcheu, R Mikut, ... arXiv preprint arXiv:2411.00552, 2024 | 1 | 2024 |
| Robust approximate characterization of single-cell heterogeneity in microbial growth RD Paul, J Seiffarth, H Scharr, K Nöh 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 1-5, 2024 | 1 | 2024 |
| A microfluidic system for the cultivation of cyanobacteria with precise light intensity and CO 2 control: enabling growth data acquisition at single-cell resolution L Witting, J Seiffarth, B Stute, T Schulze, JM Hofer, K Nöh, M Eisenhut, ... Lab on a Chip, 2025 | | 2025 |
| EAP4EMSIG--Experiment Automation Pipeline for Event-Driven Microscopy to Smart Microfluidic Single-Cells Analysis N Friederich, AJY Sitcheu, A Nassal, M Pesch, E Yildiz, M Beichter, ... arXiv preprint arXiv:2411.05030, 2024 | | 2024 |
| Customizable and Interactive Visualizations for Investigating Spatio-Temporal Single-Cell Information J Seiffarth, L Blöbaum, A Grünberger, K Nöh 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 1-5, 2024 | | 2024 |
