A mechanistic Individual-based Model of microbial communities PG Jayathilake, P Gupta, B Li, C Madsen, O Oyebamiji, ... PloS one 12 (8), e0181965, 2017 | 95 | 2017 |
NUFEB: A massively parallel simulator for individual-based modelling of microbial communities B Li, D Taniguchi, JP Gedara, V Gogulancea, R Gonzalez-Cabaleiro, ... PLoS computational biology 15 (12), e1007125, 2019 | 56 | 2019 |
Gaussian process emulation of an individual-based model simulation of microbial communities OK Oyebamiji, DJ Wilkinson, PG Jayathilake, TP Curtis, SP Rushton, B Li, ... Journal of computational science 22, 69-84, 2017 | 33 | 2017 |
Individual based model links thermodynamics, chemical speciation and environmental conditions to microbial growth V Gogulancea, R González-Cabaleiro, B Li, D Taniguchi, PG Jayathilake, ... Frontiers in microbiology, 1871, 2019 | 24 | 2019 |
Modelling bacterial twitching in fluid flows: a CFD-DEM approach PG Jayathilake, B Li, P Zuliani, T Curtis, J Chen Scientific reports 9 (1), 1-10, 2019 | 16 | 2019 |
SONCraft: A Tool for Construction, Simulation, and Analysis of Structured Occurrence Nets B Li, B Randell, A Bhattacharyya, T Alharbi, M Koutny 2018 18th International Conference on Application of Concurrency to System …, 2018 | 14* | 2018 |
A Bayesian approach to modelling the impact of hydrodynamic shear stress on biofilm deformation OK Oyebamiji, DJ Wilkinson, PG Jayathilake, SP Rushton, B Bridgens, ... Plos one 13 (4), e0195484, 2018 | 14 | 2018 |
Bayesian emulation and calibration of an individual-based model of microbial communities OK Oyebamiji, DJ Wilkinson, B Li, PG Jayathilake, P Zuliani, TP Curtis Journal of computational science 30, 194-208, 2019 | 12 | 2019 |
Coupled CFD‐DEM modeling to predict how EPS affects bacterial biofilm deformation, recovery and detachment under flow conditions Y Xia, PG Jayathilake, B Li, P Zuliani, D Deehan, J Longyear, P Stoodley, ... Biotechnology and bioengineering 119 (9), 2551-2563, 2022 | 10 | 2022 |
Time in structured occurrence nets A Bhattacharyya, B Li, B Randell International Workshop on Petri Nets and Software Engineering (PNSE’16), 35-55, 2016 | 8 | 2016 |
CFD–DEM modelling of biofilm streamer oscillations and their cohesive failure in fluid flow Y Xia, PG Jayathilake, B Li, P Zuliani, J Chen Biotechnology and Bioengineering 118 (2), 918-929, 2021 | 6 | 2021 |
Visualisation and analysis of complex behaviours using structured occurrence nets B Li Newcastle University, 2017 | 5 | 2017 |
Predicting partner fitness based on spatial structuring in a light-driven microbial community JK Sakkos, M Santos-Merino, EJ Kokarakis, B Li, M Fuentes-Cabrera, ... PLOS Computational Biology 19 (5), e1011045, 2023 | 4 | 2023 |
Unfolding CSPT-nets B Li, M Koutny International Workshop on Petri Nets and Software Engineering (PNSE’15), 207-226, 2015 | 3 | 2015 |
Spatio-temporal Model Checking for 3D Individual-Based Biofilm Simulations B Li, JP Gedara, Y Xia, TP Curtis, P Zuliani International Symposium: From Data to Models and Back, 157-174, 2022 | 1 | 2022 |
Modelling and Optimisation of a DNA Stack Nano-Device Using Probabilistic Model Checking B Li, N Mackenzie, B Shirt-Ediss, N Krasnogor, P Zuliani 28th International Conference on DNA Computing and Molecular Programming …, 2022 | 1 | 2022 |
Cooperation between autotrophic and heterotrophic denitrifiers under low C/N ratios revealed by individual-based modelling W Xing, D Gao, Y Wang, B Li, Z Zhang, P Zuliani, H Yao, TP Curtis Science of The Total Environment, 171091, 2024 | | 2024 |