| MINTbase v2. 0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects V Pliatsika, P Loher, R Magee, AG Telonis, E Londin, M Shigematsu, ... Nucleic acids research 46 (D1), D152-D159, 2018 | 163 | 2018 |
| “Off-Spotter”: very fast and exhaustive enumeration of genomic lookalikes for designing CRISPR/Cas guide RNAs V Pliatsika, I Rigoutsos Biology direct 10, 1-10, 2015 | 137 | 2015 |
| MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments V Pliatsika, P Loher, AG Telonis, I Rigoutsos Bioinformatics 32 (16), 2481-2489, 2016 | 99 | 2016 |
| tRNA fragments show intertwining with mRNAs of specific repeat content and have links to disparities AG Telonis, P Loher, R Magee, V Pliatsika, E Londin, Y Kirino, I Rigoutsos Cancer research 79 (12), 3034-3049, 2019 | 71 | 2019 |
| Ribosomal RNA fragmentation into short RNAs (rRFs) is modulated in a sex-and population of origin-specific manner T Cherlin, R Magee, Y Jing, V Pliatsika, P Loher, I Rigoutsos Bmc Biology 18, 1-19, 2020 | 56 | 2020 |
| Profit sharing and efficiency in utility games S Gollapudi, K Kollias, D Panigrahi, V Pliatsika 25th Annual European Symposium on Algorithms (ESA 2017), 2017 | 39 | 2017 |
| IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasets P Loher, N Karathanasis, E Londin, P F. Bray, V Pliatsika, AG Telonis, ... Bioinformatics 37 (13), 1828-1838, 2021 | 17 | 2021 |
| RNase κ promotes robust piRNA production by generating 2′, 3′-cyclic phosphate-containing precursors M Shigematsu, T Kawamura, K Morichika, N Izumi, T Kiuchi, S Honda, ... Nature Communications 12 (1), 4498, 2021 | 9 | 2021 |
| MINRbase: a comprehensive database of nuclear-and mitochondrial-ribosomal-RNA-derived fragments (rRFs) V Pliatsika, T Cherlin, P Loher, P Vlantis, P Nagarkar, S Nersisyan, ... Nucleic Acids Research 52 (D1), D229-D238, 2024 | | 2024 |
| Single-nucleotide Differences and Cell Type Decide the Subcellular Localization of miRNA Isoforms (isomiRs), tRNA-derived Fragments (tRFs) and rRNA-derived Fragments (rRFs) T Cherlin, Y Jing, V Pliatsika, H Wilson, L Thompson, PI Vlantis, P Loher, ... bioRxiv, 2022.08. 22.503746, 2022 | | 2022 |
