SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ... Cell 181 (5), 1016-1035. e19, 2020 | 2380 | 2020 |
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021 | 560* | 2021 |
Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19 JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ... Immunity 53 (6), 1296-1314. e9, 2020 | 304 | 2020 |
An integrated cell atlas of the lung in health and disease L Sikkema, C Ramírez-Suástegui, DC Strobl, TE Gillett, L Zappia, ... Nature medicine 29 (6), 1563-1577, 2023 | 241* | 2023 |
A versatile oblique plane microscope for large-scale and high-resolution imaging of subcellular dynamics E Sapoznik, BJ Chang, J Huh, RJ Ju, EV Azarova, T Pohlkamp, ES Welf, ... Elife 9, e57681, 2020 | 157 | 2020 |
Distribution shapes govern the discovery of predictive models for gene regulation B Munsky, G Li, ZR Fox, DP Shepherd, G Neuert Proceedings of the National Academy of Sciences 115 (29), 7533-7538, 2018 | 88 | 2018 |
Pycro-Manager: open-source software for customized and reproducible microscope control H Pinkard, N Stuurman, IE Ivanov, NM Anthony, W Ouyang, B Li, B Yang, ... Nature methods 18 (3), 226-228, 2021 | 70 | 2021 |
Tutorial: practical considerations for tissue clearing and imaging KR Weiss, FF Voigt, DP Shepherd, J Huisken Nature protocols 16 (6), 2732-2748, 2021 | 64 | 2021 |
rhIGF-1/BP3 preserves lung growth and prevents pulmonary hypertension in experimental bronchopulmonary dysplasia G Seedorf, C Kim, B Wallace, EW Mandell, T Nowlin, D Shepherd, ... American journal of respiratory and critical care medicine 201 (9), 1120-1134, 2020 | 50 | 2020 |
Mild myelin disruption elicits early alteration in behavior and proliferation in the subventricular zone EA Gould, N Busquet, D Shepherd, RM Dietz, PS Herson, ... Elife 7, e34783, 2018 | 48 | 2018 |
Multicolor structured illumination microscopy and quantitative control of polychromatic light with a digital micromirror device PT Brown, R Kruithoff, GJ Seedorf, DP Shepherd Biomedical Optics Express 12 (6), 3700-3716, 2021 | 46 | 2021 |
Fluorescence intermittency and energy transfer in small clusters of semiconductor quantum dots DP Shepherd, KJ Whitcomb, KK Milligan, PM Goodwin, MP Gelfand, ... The Journal of Physical Chemistry C 114 (35), 14831-14837, 2010 | 45 | 2010 |
Resolution doubling in light-sheet microscopy via oblique plane structured illumination B Chen, BJ Chang, P Roudot, F Zhou, E Sapoznik, M Marlar-Pavey, ... Nature methods 19 (11), 1419-1426, 2022 | 41 | 2022 |
Counting small RNA in pathogenic bacteria DP Shepherd, N Li, SN Micheva-Viteva, B Munsky, E Hong-Geller, ... Analytical chemistry 85 (10), 4938-4943, 2013 | 41 | 2013 |
Quantifying three-dimensional rodent retina vascular development using optical tissue clearing and light-sheet microscopy JN Singh, TM Nowlin, GJ Seedorf, SH Abman, DP Shepherd Journal of biomedical optics 22 (7), 076011-076011, 2017 | 32 | 2017 |
Automatic and adaptive heterogeneous refractive index compensation for light-sheet microscopy DP Ryan, EA Gould, GJ Seedorf, O Masihzadeh, SH Abman, ... Nature communications 8 (1), 612, 2017 | 28 | 2017 |
Transcriptional profiling reveals potential involvement of microvillous TRPM5-expressing cells in viral infection of the olfactory epithelium BD Baxter, ED Larson, L Merle, P Feinstein, AG Polese, AN Bubak, ... BMC genomics 22, 1-20, 2021 | 25* | 2021 |
Miniature structured illumination microscope for in vivo 3D imaging of brain structures with optical sectioning OD Supekar, A Sias, SR Hansen, G Martinez, GC Peet, X Peng, VM Bright, ... Biomedical Optics Express 13 (4), 2530-2541, 2022 | 23 | 2022 |
Gene expression model inference from snapshot RNA data using Bayesian non-parametrics Z Kilic, M Schweiger, C Moyer, D Shepherd, S Pressé Nature computational science 3 (2), 174-183, 2023 | 13 | 2023 |
Using mixture-tuned match filtering to measure changes in subpixel vegetation area in Las Vegas, Nevada C Brelsford, D Shepherd Journal of Applied Remote Sensing 8 (1), 083660, 2014 | 13 | 2014 |