Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 2015 | 2394 | 2015 |
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ... Mol Biol Evol, msx148, 2017 | 2202 | 2017 |
Structure and function of the global topsoil microbiome M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ... Nature 560 (7717), 233-237, 2018 | 1638 | 2018 |
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019 | 886 | 2019 |
A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202-1212, 2014 | 767 | 2014 |
Towards standards for human fecal sample processing in metagenomic studies. PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ... Nature biotechnology, 2017 | 739 | 2017 |
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature, 2016 | 708 | 2016 |
Recovery of gut microbiota of healthy adults following antibiotic exposure A Palleja, KH Mikkelsen, SK Forslund, A Kashani, KH Allin, T Nielsen, ... Nature microbiology 3 (11), 1255-1265, 2018 | 609 | 2018 |
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patients JR Bedarf, F Hildebrand, LP Coelho, S Sunagawa, M Bahram, F Goeser, ... Genome medicine 9, 1-13, 2017 | 561 | 2017 |
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013 | 503 | 2013 |
Extensive transmission of microbes along the gastrointestinal tract TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ... eLife 8, e42693, 2019 | 395 | 2019 |
Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature Communications 10 (1), 1014, 2019 | 362 | 2019 |
Statin therapy is associated with lower prevalence of gut microbiota dysbiosis S Vieira-Silva, G Falony, E Belda, T Nielsen, J Aron-Wisnewsky, ... Nature 581 (7808), 310-315, 2020 | 344 | 2020 |
A community computational challenge to predict the activity of pairs of compounds M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ... Nature biotechnology 32 (12), 1213-1222, 2014 | 323 | 2014 |
Host-cell sensors for Plasmodium activate innate immunity against liver-stage infection P Liehl, V Zuzarte-Luís, J Chan, T Zillinger, F Baptista, D Carapau, ... Nature medicine 20 (1), 47-53, 2014 | 323 | 2014 |
Global trends in marine plankton diversity across kingdoms of life FM Ibarbalz, N Henry, MC Brandão, S Martini, G Busseni, H Byrne, ... Cell 179 (5), 1084-1097. e21, 2019 | 320 | 2019 |
Selective maternal seeding and environment shape the human gut microbiome K Korpela, PI Costea, LP Coelho, S Kandels-Lewis, G Willemsen, ... Genome Research, gr. 233940.117, 2018 | 310 | 2018 |
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019 | 291 | 2019 |
Mahotas: Open source software for scriptable computer vision LP Coelho Journal of Open Research Software 1, e3, 2013 | 280 | 2013 |
Similarity of the dog and human gut microbiomes in gene content and response to diet LP Coelho, JR Kultima, PI Costea, C Fournier, Y Pan, ... Microbiome 6 (1), 72, 2018 | 268 | 2018 |