Protein recognition and selection through conformational and mutually induced fit Q Wang, P Zhang, L Hoffman, S Tripathi, D Homouz, Y Liu, MN Waxham, ... Proceedings of the National Academy of Sciences 110 (51), 20545-20550, 2013 | 56 | 2013 |
Computational Study of Charge-Transfer Dynamics in the Carotenoid–Porphyrin–C60 Molecular Triad Solvated in Explicit Tetrahydrofuran and Its Spectroscopic … X Sun, P Zhang, Y Lai, KL Williams, MS Cheung, BD Dunietz, E Geva The Journal of Physical Chemistry C 122 (21), 11288-11299, 2018 | 45 | 2018 |
A relay velocity model infers cell-dependent RNA velocity S Li, P Zhang, W Chen, L Ye, KW Brannan, NT Le, J Abe, JP Cooke, ... Nature biotechnology 42 (1), 99-108, 2024 | 27 | 2024 |
Conformational frustration in calmodulin–target recognition S Tripathi, Q Wang, P Zhang, L Hoffman, MN Waxham, MS Cheung Journal of Molecular Recognition 28 (2), 74-86, 2015 | 24 | 2015 |
Molecular dynamics ensemble refinement of intrinsically disordered peptides according to deconvoluted spectra from circular dichroism JC Ezerski, P Zhang, NC Jennings, MN Waxham, MS Cheung Biophysical journal 118 (7), 1665-1678, 2020 | 19 | 2020 |
Molecular-Level Exploration of the Structure-Function Relations Underlying Interfacial Charge Transfer in the Subphthalocyanine/ Organic Photovoltaic System J Tinnin, S Bhandari, P Zhang, H Aksu, B Maiti, E Geva, BD Dunietz, ... Physical Review Applied 13 (5), 054075, 2020 | 16 | 2020 |
Opposing intermolecular tuning of Ca2+ affinity for calmodulin by neurogranin and CaMKII peptides P Zhang, S Tripathi, H Trinh, MS Cheung Biophysical Journal 112 (6), 1105-1119, 2017 | 16 | 2017 |
Induced polarization restricts the conformational distribution of a light-harvesting molecular triad in the ground state ON Starovoytov, P Zhang, P Cieplak, MS Cheung Physical Chemistry Chemical Physics 19 (34), 22969-22980, 2017 | 14 | 2017 |
Comprehensive spectral libraries for various rabbit eye tissue proteomes G Qin, P Zhang, M Sun, W Fu, C Cai Scientific Data 9 (1), 111, 2022 | 8 | 2022 |
Determining the atomic charge of calcium ion requires the information of its coordination geometry in an EF-hand motif P Zhang, J Han, P Cieplak, M Cheung The Journal of Chemical Physics 154 (12), 2021 | 8 | 2021 |
On the Interplay between Electronic Structure and Polarizable Force Fields When Calculating Solution-Phase Charge-Transfer Rates J Han, P Zhang, H Aksu, B Maiti, X Sun, E Geva, BD Dunietz, MS Cheung Journal of Chemical Theory and Computation 16 (10), 6481-6490, 2020 | 7 | 2020 |
Correlating Interfacial Charge Transfer Rates with Interfacial Molecular Structure in the Tetraphenyldibenzoperiflanthene/C70 Organic Photovoltaic System J Tinnin, S Bhandari, P Zhang, E Geva, BD Dunietz, X Sun, MS Cheung The Journal of Physical Chemistry Letters 13 (3), 763-769, 2022 | 6 | 2022 |
Coarse-Grained Modeling and Molecular Dynamics Simulations of Ca2+-Calmodulin J Nde, P Zhang, JC Ezerski, W Lu, K Knapp, PG Wolynes, MS Cheung Frontiers in Molecular Biosciences 8, 661322, 2021 | 6 | 2021 |
CTRAMER: An open-source software package for correlating interfacial charge transfer rate constants with donor/acceptor geometries in organic photovoltaic materials J Tinnin, H Aksu, Z Tong, P Zhang, E Geva, BD Dunietz, X Sun, ... The Journal of Chemical Physics 154 (21), 2021 | 5 | 2021 |
Experiment and Simulation Reveal Residue Details for How Target Binding Tunes Calmodulin’s Calcium-Binding Properties J Nde, P Zhang, MN Waxham, MS Cheung The Journal of Physical Chemistry B 127 (13), 2900-2908, 2023 | 1 | 2023 |
Protein Association Involving Intrinsic Disordered Proteins and Its Regulation on Synaptic Plasticity through Modulating CA2+ Binding P Zhang | | 2016 |